Daily Papers

Low latent prediction error does not establish that a world model distinguishes the consequences of its actions. We introduce an evaluation protocol that traces the same intervention through simulator state, raster observations, target embeddings, and predictor outputs. Exact simulator-state forks in a controlled deformable-physics testbed reveal distinct bottlenecks. Changed commands alter particle motion, yet 41.5% of one-step raster pairs are identical. Observation loss is not the whole explanation: among 579 high-visibility counterfactuals, median predictor-to-target response is 0.0051 and 0.0217 across two seeds, falling to 0.0027 and 0.0116 after variance normalization. An isotropic state perturbation matched to the target counterfactual embedding shift produces 190x and 53x larger predictor changes on the same visible pairs, isolating action-path under-use rather than a dead or globally shrunk predictor. MSE-only training gives 8.36x lower 10-step latent error in matched seeds, but in spectrally concentrated spaces; one VICReg target encoder is also strongly concentrated, so neither error nor rank alone certifies physical state. Finally, stiffness remains near chance even from full-resolution rasters and mechanical state while privileged material parameters decode perfectly, indicating weak identifiability under this excitation rather than encoder discard. These results motivate auditing physical effect, observation visibility, representation geometry, and action dependence separately.

How strongly do the remaining diffusion-sampling steps amplify a perturbation at a late latent state? Standard measurements answer this question with newly sampled isotropic noise, even though perturbations encountered during sampling have already been transformed by earlier steps. We compare these two cases directly. For each trajectory, we transport a centered perturbation from an earlier step to a late state, then replay its direction at the same magnitude as a newly sampled isotropic perturbation; both then undergo the same remaining updates. Across the samplers we study, median paired shaped-to-fresh angular-gain ratios range from 1.14 to 2.35. Shaped angular gain exceeds its matched fresh counterpart in every trajectory in the original main cohorts. The same pattern appears when endpoint change is measured by latent RMS. The effect also appears in perceptual feature representations: earlier-sampling directions cause larger feature changes at the endpoint, even when the corresponding pixel-space change is comparable. Permuting shaped directions across trajectories weakens the effect, including within class, indicating that the advantage depends on alignment with the receiving trajectory as well as on shared directional structure.

The second part of Hilbert's 16th problem is one of the most fundamental open problems in the qualitative theory of ordinary differential equations and dynamical systems. A central unresolved question is whether the Hilbert number H(d) is finite for arbitrary polynomial degree d. (A very recent manuscript from OpenAI asserts the finiteness of H(d); see the remark at the end of this paper.) In the absence of a general upper bound theory, most existing work constructs explicit perturbed polynomial systems to obtain improved lower bounds for H(d), while rigorous upper bound estimates remain largely unavailable. This paper focuses on improving the quantitative lower bound for polynomial systems through a systematic Hierarchical Melnikov Realization framework. We construct perturbed dynamics based on an anisotropic Chebyshev Hamiltonian, where hierarchically selected perturbation coefficients generate simple zeros of the first-order Melnikov function simultaneously across multiple disjoint period annuli. Two distinct 3-adic filtrations supply the necessary logarithmic correction factors, and a Borel--Gauss analysis establishes the required local rank condition under sufficiently strong anisotropy. As the main result of this work, we prove that H(d)=Ωbigl(d^2ln^2 dbigr), which improves the previously known lower bound by a factor of ln d. The full construction of limit cycles and the resulting dynamical bounds are formally certified using Lean 4 formal verification.

In this paper, we introduce tensor involved peridynamics, a unified framework for simulating both isotropic and anisotropic materials. While traditional peridynamics models effectively simulate isotropic materials, they face challenges with anisotropic materials and are prone to instability caused by zero energy modes. Our novel model extend the linear bond based peridynamics framework by incorporating the elastic tensor into the micrmodulus function, thereby ensuring stability for anisotropic materials without the need for additional corrections. For isotropic materials. the model mantains compatibility with conventional bond based peridynamics, assuming Possion's rations of 1/4 in 3D and 1/3 in 2D.Numerical experiments confirm the model's stability and accuracy across various scenarios. Additionally, we introduce a damage model for isotropic materials. validating its performance in predicting crack propagation paths in a 2D plate. The results show superior alignment with experimental date compared to traditional model.

In this paper, we study the problem of sampling from a probability distribution using Langevin-type dynamics. We consider overdamped Langevin dynamics perturbed by adding a Stratonovich perturbation that preserves reversibility. We prove an optimal scaling for the Stratonovich perturbation applied to Gaussian target distributions and derive an algorithm to construct such perturbation. Our theoretical results are supplemented by numerical experiments in which we compare our proposed method with nonreversible samplers and overdamped Langevin dynamics. Our numerical experiments demonstrate the efficiency of the approach beyond the quadratic case.

Predicting cellular responses to perturbations is a central problem in cellular biology, with broad applications in systems biology and drug discovery. This task is challenging because cellular responses can be complex and cell-state dependent, intrinsic cell-to-cell variability can be confounded with perturbation effects, and destructive single-cell RNA sequencing precludes paired measurements of the same cell before and after treatment. Flow matching transports control cells to perturbed states flexibly, but acting on the full cell state can confound perturbation effects with pre-existing cell-to-cell variability. Disentangled approaches separate responsive from invariant components, but model perturbations through prescribed mechanisms, such as latent shifts or graph edits, limiting their flexibility. We address both limitations in a unified framework. A variational encoder disentangles each cell into an invariant block, capturing state unaffected by the perturbation, and a responsive block, capturing state it changes, through conditional priors and an information-theoretic invariance constraint. Conditional flow matching transports only the responsive block, conditioned on the perturbation and invariant state, yielding a flexible, data-driven model of perturbation effects without confounding pre-existing variability. Across several benchmarks, our method outperforms the strongest published method in settings involving combinatorial and unseen perturbation prediction.

We present anyakrakusuma, an open-source Python library that solves the discrete static Schrödinger bridge problem, the entropically regularized counterpart of optimal transport, through a log-domain Sinkhorn--Knopp iteration and reconstructs the entropic interpolation between two empirical point clouds. The solver is paired with a diagnostic pipeline that characterizes the optimal coupling and the intermediate distributions through information-theoretic and geometric measures. We exercise the library on four idealized planar cases spanning a circle-to-circle dilation, a spiral-to-mixture fragmentation, a rigid reorientation of two moons, and a Lissajous-to-trefoil deformation. The log-domain formulation is necessary rather than merely convenient at the parameters studied, where the cost-to-regularization ratio reaches four hundred and the Gibbs kernel underflows double precision across most of its range; the iteration nonetheless attains a marginal residual of 10^{-9} and unit marginal fidelity in every case. Residual histories decay geometrically over approximately eight decades at per-iteration contraction factors between 0.966 and 0.976, which are local rates near the fixed point that lie many orders of magnitude below the worst-case Hilbert-metric bound. The covariance analysis recovers an imposed ninety-degree reorientation to within 0.07^circ, roughly forty times smaller than its uncertainty, across a masked interval of near-isotropy on which the principal axis is unobservable. The diagnostics are reported with explicit attention to the regimes in which each is well defined, including the differential entropy, which is meaningful only on the open interpolation interval. The presented cases are constructed rather than measured; quantitative application to empirical point clouds requires further study.

Cosmological first-order phase transitions can generate curvature perturbations through inhomogeneous quantum tunneling, as studied previously on superhorizon scales. In this work, we for the first time conduct three-dimensional lattice simulations that incorporate scalar metric perturbations and radiation perturbations, covering a range from bubble wall scales to super-horizon scales. We obtain the precise scalar perturbation power spectrum and the probability density function of energy density perturbations. Furthermore, we simulate the gravitational-wave energy spectra generated by each source during the first-order phase transition, including the scalar field itself, scalar metric perturbations, and the energy density and velocity perturbations of radiation. For gravitational waves, the contribution from other sources can exceed 1/3 of that from the scalar field at superhorizon scales. Additionally, we compare the effects of different values of the transition strength and rate on the results. This paper provides more accurate numerical results for research aimed at detecting or constraining first-order phase transitions via gravitational waves and curvature perturbations.

We theoretically identify the noise-induced coherent contribution to the ergotropy of a four-level quantum heat engine coupled to a unimodal quantum cavity. We utilize a protocol where the passive state's quasiprobabilities can be analytically identified from the population-coherence coupled reduced density matrix. The reduced density matrix elements are evaluated using a microscopic quantum master equation formalism. Multiple ergotropies within the same coherence interval, each characterized by a positive and pronounced coherent contribution, are observed. These ergotropies are a result of population inversion as well as quasiprobability-population inversion, controllable through the coherence measure parameters. The optimal flux and power of the engine are found to be at moderate values of ergotropy with increasing values of noise-induced coherence. The optimal power at different coherences is found to possess a constant ergotropy.

Layered viscoelastic interiors control the frequency dependence of planetary tidal dissipation, but repeated layered Love-number calculations are expensive in long-term orbital and spin integrations. Equivalent homogeneous rheologies provide a cheaper representation of the same response, but their effective parameters do not by themselves identify the interior layers they represent. We develop a local interpretation of such parameters by differentiating the layered-to-homogeneous construction about a fixed-geometry baseline, perturbing only selected layer rigidities and viscosities. We use the pole-residue representation of the degree-two Love number to construct a physical-to-effective transfer matrix. We then use its singular values, resolution matrix, and mode-dominance matrix to determine which physical perturbations are visible in the Love-number response and how they appear in effective-rheology coordinates. Applied to a five-layer lunar model, the full degree-two response is sensitive to seven of eight solid-layer rheological parameters. The single near-null direction is the inner-core rigidity, consistent with shielding by the fluid outer core and with the weak dependence of Love numbers on core elastic structure. Over the LLR frequency interval, fewer physical directions are visible. To first order, the elastic spring, isolated dashpot, and two Voigt elements reproduce the nine-pole response over this interval. Finite perturbations confirm the tangent prediction to within a few percent, with the validity radius limited by a nearly degenerate pair of long-timescale modes.

Weak perturbations of equal size can produce terminal Wasserstein errors of different orders. For Gaussian-smoothed infinitely divisible laws, we differentiate distribution functions with respect to variance-weighted Lévy characteristics, including distributional directions generated by moving atoms. We obtain first- and second-order expansions uniform over Lipschitz tests. Gaussian analyticity identifies the signed second coefficient of the Wasserstein-1 distance when the first response is nonzero. When it vanishes, a finite second displacement moment yields a quadratic response, strictly positive for nonzero displacement dispersion. For local balanced remeshing, the error is comparable to the grid-alignment variance, giving sharp quadratic grid rates for compactly supported densities and nonaligned atomic sequences. We derive metric speed and length along admissible non-atomic curves and a response-based linear program with a certified oracle gap and consistent quadrature. We also establish the sharp vanishing-smoothing transition and a multivariate second-order expansion. The Supplement treats state-dependent responses and further stability estimates.

This project focuses on a method to extract a frequency comb in mechanical means, for general interest and numerous practical applications in MEMS. The method of execution is the implementation of a beam that is exhibiting non-linear dynamics that is perturbed and analyzed for its transverse vibrations. The perturbation is an external harmonic driver with a chosen small amplitude and frequency (which is slightly detuned from the beam eigenfrequency), that when engaged with the unperturbed beam oscillations, causes it reach a state of "injection pulling" - an effect that occurs when one harmonic oscillator is coupled with a second one and causes it to oscillate in a frequency near its own. This causes the beam to reach SNIC bifurcation, rendering a frequency comb as desired. Theoretical analysis showed that the problem can be modelled using a non-linear equation of the beam, that translates to a form of the non-linear Duffing equation. While a solution to the dynamics function of the beam is hard to obtain in practice due to mathematical difficulties, a slow evolution model is suggested that is composed of functions of a amplitude and phase. Using several additional mathematical assumptions, the amplitude is seen to be related to the phase, while the phase equation solution is seen to be of the form of Adler's equation. These assumptions ultimately reduce the entire behaviour of the beam to a relatively simple solution to the Adler equation, which has a known analytical solution. Computerized numerical simulations are run on it to check the results and compare them to the theory and desired outcome. The results agreed with the theory and produce the expected frequency comb, showing the assumptions to be valid in extracting the comb.

AI-based cellular perturbation prediction is essential to accelerate drug discovery and therapeutic identification. However, perturbation-specific signals are generally obscured by cellular complexity, making it difficult for existing methods to correctly capture perturbation effects. To address this problem, we propose PerturbEnergy, which introduces a conditional energy-based prior over perturbation representations. It assigns lower energy (higher probability) to representations compatible with the given perturbation and higher energy to others, thereby explicitly tilting the latent space toward perturbation-preferred regions. Besides, PerturbEnergy can be integrated into autoencoder architectures as we find its Evidence Lower Bound (ELBO) is equivalent to the ELBO of the complete autoencoder. We further prove that optimizing PerturbEnergy increases the lower bound on the conditional mutual information between representation and perturbation. Extensive experiments on four benchmark datasets demonstrate the effectiveness of our PerturbEnergy: it improves perturbation recognition especially in latent space with improvement of up to 83.2\%; It also achieves state-of-the-art performance for predicting top-50/100/200 differentially expressed gene(DEG) response and remaining competitive on highly variable gene(HVG) prediction. The code is provided: https://github.com/BlueWhaleLab/PerturbEnergy

Let P_h be a semiclassical pseudodifferential operator on a closed Riemannian manifold (M,g), with principal symbol p. We consider perturbations P_h+h^αQ, with 0<αle 1, where Q is a semiclassical pseudodifferential operator whose symbol oscillates at scale h^β, with 2β<α. Assuming that the classical dynamics of the unperturbed system on a regular energy surface p^{-1}(E) is hyperbolic, we prove a Gutzwiller trace formula for the perturbed operator that holds up to times of order |log h|. This formula relates the distribution of energy levels of the quantum system near the energy E to the periodic orbits of its classical counterpart. The perturbation h^αQ affects only the phases appearing in the trace formula.

We study the parameter dependence and transversality properties of trajectories of the controlled ODE $ U_x = P, qquad P_x = - f(U) - βP + tilde α(x)U, arising from traveling-wave solutions of a bistable reaction-diffusion equation with control. Optimal profiles minimizing the L^1-norm of the control \tilde α are determined by the unstable and stable manifolds Γ_u, Γ_s, the critical curve P^*(U) = Uf(U), and the associated function F(U) = dP^*{dU} + f(U){P^*(U)}. We establish generic transversality properties for these objects with respect to perturbations of the speed β and the nonlinear source f, together with quantitative estimates on the first- and second-order dependence of the invariant manifolds on these parameters. We also analyze the loss of regularity at the critical speed β^{**}, where the unstable manifold approaches the strongly stable manifold of the equilibrium (U^*,0)$. These results provide the ODE ingredients used in the analysis of the structure and regularity of optimal profiles in paper [S. Bianchini and C. Trifone. Traveling profiles and control cost for a PDE describing the evolution of invasive species. 2026. arXiv: 2606.23979 [math.OC]].

Diffusion models have achieved remarkable success in generative modeling, with their sampling procedures routinely modified to control generation and improve efficiency. These modifications introduce perturbations along the sampling trajectory, raising a central question: how do such perturbations affect generated output? To address this question, we develop a theoretical framework to investigate perturbation propagation, combining dynamical analysis of the sampling process with an information-theoretic characterization of output responses. Within this framework, we quantify perturbation strength using the Kullback--Leibler (KL) divergence between perturbed and reference trajectory distributions, termed as path cost, which is shown to bound, but do not determine, changes in the output distribution. Building on this analysis, we derive a response identity that connects the propagation and accumulation of local perturbations with the information captured by a selected feature mean, explaining why changes in the output distribution can remain undetected by its first-order response. We test our theoretical analysis through controlled interventions at equal path cost in pretrained diffusion models, revealing distinct patterns of output sensitivity across sampling stages and spatial frequencies. To assess whether our framework can diagnose perturbations arising from practical approximations, we apply it to cache-based acceleration and show that our propagation analysis reliably identifies sampling intervals where caching causes larger image errors.

Tensor randomized Kaczmarz (TRK) methods are efficient row-action solvers for tensor linear systems under the t-product framework. We study their behavior under a doubly noisy perturbation model. In this model, both the system tensor and the right-hand side tensor are corrupted. We first analyze standard TRK and derive an expected error recursion with two terms. One term is contractive, and the other is a persistent perturbation term. This explains the noise-limited and semi-convergent behavior that can occur when the observed tensor system is inconsistent. We then introduce a spectrally damped tensor randomized Kaczmarz method (SD-TRK). We prove an expected error recursion for SD-TRK that separates error propagation from noise injection. The bound makes explicit a speed-robustness trade-off. We also give an FFT-based implementation that applies the damped update slice-wise in the Fourier domain. This implementation allows frequency-dependent damping parameters in practice. Numerical experiments on synthetic tensor systems illustrate the stabilization behavior of SD-TRK relative to standard TRK in noisy and ill-conditioned settings. We also include a two-pass image reconstruction comparison under the same noisy reconstruction pipeline.

Flow-based generative models have been employed for sampling the Boltzmann distribution, but their application to high-dimensional systems is hindered by the significant computational cost of obtaining the Jacobian of the flow. To overcome this challenge, we introduce the flow perturbation method, which incorporates optimized stochastic perturbations into the flow. By reweighting trajectories generated by the perturbed flow, our method achieves unbiased sampling of the Boltzmann distribution with orders of magnitude speedup compared to both brute force Jacobian calculations and the Hutchinson estimator. Notably, it accurately sampled the Chignolin protein with all atomic Cartesian coordinates explicitly represented, which, to our best knowledge, is the largest molecule ever Boltzmann sampled in such detail using generative models.

In this note, we show that the Local Molecular Field theory of Weeks et. al. can be re-derived as an extremum problem for an approximate Helmholtz free energy. Using the resulting free energy as a classical, fluid density functional yields an implicit solvent method identical in form to the Molecular Density Functional theory of Borgis et. al., but with an explicit formula for the 'ideal' free energy term. This new expression for the ideal free energy term can be computed from all-atom molecular dynamics of a solvent with only short-range interactions. The key hypothesis required to make the theory valid is that all smooth (and hence long-range) energy functions obey Gaussian statistics. This is essentially a random phase approximation for perturbations from a short-range only, 'reference,' fluid. This single hypothesis is enough to prove that the self-consistent LMF procedure minimizes a novel density functional whose 'ideal' free energy is the molecular system under a specific, reference Hamiltonian, as opposed to the non-interacting gas of conventional density functionals. Implementation of this new functional into existing software should be straightforward and robust.

Two-point zeroth order methods are important in many applications of zeroth-order optimization, such as robotics, wind farms, power systems, online optimization, and adversarial robustness to black-box attacks in deep neural networks, where the problem may be high-dimensional and/or time-varying. Most problems in these applications are nonconvex and contain saddle points. While existing works have shown that zeroth-order methods utilizing Omega(d) function valuations per iteration (with d denoting the problem dimension) can escape saddle points efficiently, it remains an open question if zeroth-order methods based on two-point estimators can escape saddle points. In this paper, we show that by adding an appropriate isotropic perturbation at each iteration, a zeroth-order algorithm based on 2m (for any 1 leq m leq d) function evaluations per iteration can not only find epsilon-second order stationary points polynomially fast, but do so using only Oleft(d{mepsilon^{2}psi}right) function evaluations, where psi geq Omegaleft(epsilonright) is a parameter capturing the extent to which the function of interest exhibits the strict saddle property.

In this paper, we examine the thermodynamic behavior of a quantum harmonic oscillator with a position-dependent mass (PDM), where spatial inhomogeneity is modeled through a deformation parameter α. Based on the exact energy spectrum, we explore the resulting thermodynamic quantities and superstatistics. Our findings reveal that increasing α leads to a decrease in entropy and specific heat, reflecting a confinement-induced reduction in the number of accessible states. The partition function and free energy exhibit smooth behavior across all parameter regimes, indicating the absence of critical phase transitions. This study underscores the influence of mass deformation on quantum thermal responses and demonstrates that, while the overall thermodynamic trends are consistent with those reported in the literature, certain distinctive features emerge due to the specific form of the deformation.

Building Virtual Cells that can accurately simulate cellular responses to perturbations is a long-standing goal in systems biology. A fundamental challenge is that high-throughput single-cell sequencing is destructive: the same cell cannot be observed both before and after a perturbation. Thus, perturbation prediction requires mapping unpaired control and perturbed populations. Existing models address this by learning maps between distributions, but typically assume a single fixed response distribution when conditioned on observed cellular context (e.g., cell type) and the perturbation type. In reality, responses vary systematically due to unobservable latent factors such as microenvironmental fluctuations and complex batch effects, forming a manifold of possible distributions for the same observed conditions. To account for this variability, we introduce PerturbDiff, which shifts modeling from individual cells to entire distributions. By embedding distributions as points in a Hilbert space, we define a diffusion-based generative process operating directly over probability distributions. This allows PerturbDiff to capture population-level response shifts across hidden factors. Benchmarks on established datasets show that PerturbDiff achieves state-of-the-art performance in single-cell response prediction and generalizes substantially better to unseen perturbations. See our project page (https://katarinayuan.github.io/PerturbDiff-ProjectPage/), where code and data will be made publicly available (https://github.com/DeepGraphLearning/PerturbDiff).

The problem of attribution is concerned with identifying the parts of an input that are responsible for a model's output. An important family of attribution methods is based on measuring the effect of perturbations applied to the input. In this paper, we discuss some of the shortcomings of existing approaches to perturbation analysis and address them by introducing the concept of extremal perturbations, which are theoretically grounded and interpretable. We also introduce a number of technical innovations to compute extremal perturbations, including a new area constraint and a parametric family of smooth perturbations, which allow us to remove all tunable hyper-parameters from the optimization problem. We analyze the effect of perturbations as a function of their area, demonstrating excellent sensitivity to the spatial properties of the deep neural network under stimulation. We also extend perturbation analysis to the intermediate layers of a network. This application allows us to identify the salient channels necessary for classification, which, when visualized using feature inversion, can be used to elucidate model behavior. Lastly, we introduce TorchRay, an interpretability library built on PyTorch.

We study the Cauchy problem for the one-dimensional isothermal compressible Navier--Stokes system with the van der Waals equation of state, and analyze the well-posedness and asymptotic stability of steady-state phase-transition solutions at subcritical temperatures. Working in Lagrangian coordinates, we use variational techniques to construct piecewise smooth steady-state solutions corresponding to two-phase equilibrium states under finite-mass perturbations. Introducing artificial-viscosity regularization, we first establish existence of the global minimizer of the regularized variational problem, unique within each fixed symmetry class; passing to the vanishing artificial-viscosity limit then yields a physically admissible steady-state solution with two phase interfaces. For initial perturbations that are small with respect to energy, piecewise-gradient, total-variation, and integral norms but may exhibit large pointwise jumps across phase boundaries, we derive uniform a priori bounds for weak solutions near the two-phase equilibrium profile. We further prove that these global weak solutions converge to the steady-state two-phase equilibrium in L^infty(R) as ttoinfty, thereby characterizing their large-time asymptotic behavior. Physically, finite mass perturbations break the uniqueness of the uniform steady state and generate infinitely many piecewise constant two-phase equilibria satisfying the Maxwell equal-area rule. Artificial viscosity acts as a selection principle that singles out the physically relevant two-interface steady-state configuration, and this two-phase equilibrium is asymptotically stable under small integral perturbations that allow large-amplitude discontinuities at phase interfaces.

Informational completeness (IC) guarantees that an inverse exists, not that it is statistically well conditioned. For minimal rank-one Weyl--Heisenberg (WH) measurements, covariance makes the nonidentity projector-Gram spectrum proportional to the fiducial's ambiguity intensities, with eigenvalues \(d|χ_ϕ(u)|^2\), turning stability into an explicit worst-direction design problem; write \(λ\) for its smallest nonidentity eigenvalue. Haar fiducials are IC almost surely while \(\mathbb E[λ^{-1}]=\infty\), and an explicit geometric family used to establish balanced informationally complete measurements in every dimension has a normalized spectral floor bounded above by an exponentially decaying envelope. We then construct a hierarchy of minimal measurements. A cyclic family with exactly \(d^2\) outcomes in every integer dimension has floors \(Θ(d^{-3})\) for odd \(d\) and \(Θ(d^{-5})\) for even \(d\); a finite-field family for \(q=2^m\) obeys the uniform bound \(λ\ge4/9\). Our main result treats every prime-power dimension of characteristic \(p\ge5\). A balanced one-coordinate perturbation repairs the zero ambiguity axis of a cubic Alltop state, gives an attained floor uniformly bounded below by a positive constant, and confines the entire nonidentity spectrum to \([L_q,U_q]\) with \(U_q/L_q\to1\). Its SIC-normalized minimum tends to one, and \(λ(ϕ_q)/Λ_q^\star\to1\) for the global finite-field WH max--min optimum \(Λ_q^\star\), without assuming SIC existence. The complete spectrum determines the exact finite-sample Hilbert--Schmidt error of canonical linear inversion at \(I/d\), while its lower edge controls local Fisher efficiency and canonical-shadow bounds.

We study the transverse-field axial next-nearest-neighbor Ising (ANNNI) model on the square lattice and on a bilayer. At the classical multiphase point κ=J_2/J_0=1/2, every configuration of straight domain walls that separates domains of at least two sites is a ground state. The walls are rigid, so perturbation theory in the transverse field g=Γ/J_0 can be carried out for each configuration separately, and we take it to order g^8. Quantum fluctuations select langle 3rangle (uparrowuparrowuparrowdownarrowdownarrowdownarrow) at order g^2, because spins next to a wall gain the most energy from virtual flips. The structures langle 23rangle, langle 223rangle and langle 2223rangle then open between langle 3rangle and the antiphase langle 2rangle at orders g^4, g^6 and g^8, in the order of the Fisher-Selke sequence of the classical three-dimensional model. A second layer suppresses each successive phase more strongly, beyond the stiffening of the local fields. We test the two widest phases with stochastic series expansion quantum Monte Carlo, comparing the free energies of the competing ordered states by thermodynamic integration, since annealing freezes in the modulation that forms at the ordering transition. The simulations reproduce the langle 3rangle wedge to about 1%, and in a pre-registered test langle 23rangle is stable at six of seven points, with the seventh resolved by post-hoc runs.

Deep reinforcement learning systems often suffer from unstable training dynamics due to non-stationarity, where learning objectives and data distributions evolve over time. We show that under non-stationary targets, isotropic Gaussian embeddings are provably advantageous. In particular, they induce stable tracking of time-varying targets for linear readouts, achieve maximal entropy under a fixed variance budget, and encourage a balanced use of all representational dimensions--all of which enable agents to be more adaptive and stable. Building on this insight, we propose the use of Sketched Isotropic Gaussian Regularization for shaping representations toward an isotropic Gaussian distribution during training. We demonstrate empirically, over a variety of domains, that this simple and computationally inexpensive method improves performance under non-stationarity while reducing representation collapse, neuron dormancy, and training instability.

Weather Jiu-Jitsu is a control paradigm for extreme climatological events, inspired by chaos theory. As a proposition, small, precise, targeted, and cost-inexpensive perturbations can redirect trajectories of a large dynamical system. This strategy has been demonstrated analytically in the Lorenz-63 system, where a naturally chaotic trajectory switching between two attractors can be confined to a single attractor, indefinitely, via arbitrarily small perturbations. This paper examines the feasibility of Microsoft's Aurora -- a 1.3 billion parameter global atmospheric model -- as a test bed for this strategy. This paper explores three questions: (1) Is Aurora a reliable enough simulation environment to serve as a meaningful testbed? (2) Are the perturbations required to redirect its trajectories small enough to be physically plausible? (3) Does Aurora's learned latent space (the parametric estimators on climatological attributes) yield any apparent, structured, and/or perhaps interpretable features that can convey a geo/atmospheric response to initial conditions? We find evidence consistent with all three: Aurora's modeled trajectories respond to perturbations beyond measurement drift, the perturbation magnitudes required are small relative to the model's own forecast uncertainty, and its latent representations exhibit directional structure that responds to Jiu-Jitsu-type interventions, even though that structure does not separate extreme from normal states outright. These results should be read as feasibility diagnostics rather than a demonstration of control: we do not implement or test an actual steering intervention on Aurora, and several of our findings, particularly around the model's latent-space geometry, are exploratory.

We derive rates of exponential relative-entropy decay for a broad class of infinite-dimensional quantum Gibbs samplers. A key technical ingredient is a perturbative stability theory for hypercontractive estimates and logarithmic Sobolev inequalities. For suitably chosen dissipative couplings, we obtain exponential entropy decay for full multimode Bose-Hubbard samplers with arbitrary hopping and repulsive density interactions. For harmonically confined quantum Coulomb gases and molecular systems, we prove exponential entropy decay for every fixed finite-rank low-energy truncation of the interaction. Finally, we exhibit a periodic charging model with a positive spectral gap but no finite-time L^2-to-L^p bound for any p>2.

We prove that all excited states -sin(nx), ngeq2, of the De Gregorio equation on the torus are nonlinearly unstable in the sense of Hadamard. More precisely, perturbations arbitrarily small in H^2 leave a fixed H^1 neighborhood of the state. For every ngeq2, the linearized operator has a real eigenvalue λ_nin(0.56,0.6). To prove this, we transform the eigenvalue problem into a Fuchsian equation on the complex disk and obtain a matching condition for the eigenvalue. This condition is verified rigorously using interval arithmetic. The nonlinear instability follows from a bootstrap argument in the spirit of Guo, Hallstrom, and Spirn.

The dynamical realisation of the equation of state p +rho =0 is studied. A non-pathological dynamics for the perturbations of such a system mimicking a dynamical cosmological constant (DCC) requires to go beyond the perfect fluid paradigm. It is shown that an anisotropic stress must be always present. The Hamiltonian of the system in isolation resembles the one of a Pais-Uhlenbeck oscillator and linear stability requires that it cannot be positive definite. The dynamics of linear cosmological perturbations in a DCC dominated Universe is studied in detail showing that when DCC is minimally coupled to gravity no dramatic instability is present. In contrast to what happens in a cosmological constant dominated Universe, the non-relativistic matter contrast is no longer constant and exhibits an oscillator behaviour at small scales while it grows weakly at large scales. In the gravitational waves sector, at small scales, the amplitude is still suppressed as the inverse power of the scale factor while it grows logarithmically at large scales. Also the vector modes propagate, though no growing mode is found.

Quantum algorithms for probing ground-state properties of quantum systems require good initial states. Projection-based methods such as eigenvalue filtering rely on inputs that have a significant overlap with the low-energy subspace, which can be challenging for large, strongly-correlated systems. This issue has motivated the study of physically-inspired dynamical approaches such as thermodynamic cooling. In this work, we introduce a ground-state preparation algorithm based on the simulation of quantum dynamics. Our main insight is to transform the Hamiltonian by a shifted sign function via quantum signal processing, effectively mapping eigenvalues into positive and negative subspaces separated by a large gap. This automatically ensures that all states within each subspace conserve energy with respect to the transformed Hamiltonian. Subsequent time-evolution with a perturbed Hamiltonian induces transitions to lower-energy states while preventing unwanted jumps to higher energy states. The approach does not rely on a priori knowledge of energy gaps and requires no additional qubits to model a bath. Furthermore, it makes mathcal{O}(d^{,3/2}/epsilon) queries to the time-evolution operator of the system and mathcal{O}(d^{,3/2}) queries to a block-encoding of the perturbation, for d cooling steps and an epsilon-accurate energy resolution. Our results provide a framework for combining quantum signal processing and Hamiltonian simulation to design heuristic quantum algorithms for ground-state preparation.

Predicting how a cell will change its transcriptional state under a developmental signal or a genetic perturbation is the computational core of in-silico biology and the AI Virtual Cell program. Existing approaches either fit static control-to-treated maps that discard time, or solve multi-step ODE / Schrödinger-bridge problems on each dataset independently. We introduce Chreode, a one-step cell world model that predicts action-conditioned cell-state transitions through a structured residual transition operator. It shifts distributional evolution from inference time to training time, enabling single-pass generation while preserving a Waddington-inspired decomposition into downhill landscape flow, rotational in-tangent dynamics, and stochastic spread. The model is pretrained with a shared scVI encoder and a DiT-based dynamics backbone on a 2.4M-cell mouse embryonic atlas spanning 7 datasets. As a fine-tuning initialization, Chreode improves per-target Sinkhorn distance on Weinreb hematopoiesis and Veres islet differentiation over matched scratch models, PI-SDE, and PRESCIENT. As a transferable gene-state embedding for GEARS, the pretrained dynamics representation reduces shared-vocabulary DE20 mean squared error on Norman Perturb-seq from 0.2121 to 0.1858, a 12.4% relative improvement, without changing the GEARS training procedure. We interpret this transfer to perturbation prediction as evidence that pretrained developmental-trajectory dynamics encode differentiation primitives transferable to CRISPR-induced state shifts, since both involve cell-state transitions in a shared latent geometry. The pretrained backbone additionally produces zero-shot clonal fate scores on Weinreb that are competitive with strong dynamic-OT baselines.

Recent advances in flow-based offline reinforcement learning (RL) have achieved strong performance by parameterizing policies via flow matching. However, they still face critical trade-offs among expressiveness, optimality, and efficiency. In particular, existing flow policies interpret the L_2 regularization as an upper bound of the 2-Wasserstein distance (W_2), which can be problematic in offline settings. This issue stems from a fundamental geometric mismatch: the behavioral policy manifold is inherently anisotropic, whereas the L_2 (or upper bound of W_2) regularization is isotropic and density-insensitive, leading to systematically misaligned optimization directions. To address this, we revisit offline RL from a geometric perspective and show that policy refinement can be formulated as a local transport map: an initial flow policy augmented by a residual displacement. By analyzing the induced density transformation, we derive a local quadratic approximation of the KL-constrained objective governed by the Fisher information matrix, enabling a tractable anisotropic optimization formulation. By leveraging the score function embedded in the flow velocity, we obtain a corresponding quadratic constraint for efficient optimization. Our results reveal that the optimality gap in prior methods arises from their isotropic approximation. In contrast, our framework achieves a controllable approximation error within a provable neighborhood of the optimal solution. Extensive experiments demonstrate state-of-the-art performance across diverse offline RL benchmarks. See project page: https://github.com/ARC0127/Fisher-Decorator.

We calculate the motion of binary mass systems in gravity up to the sixth post--Newtonian order to the G_N^3 terms ab initio using momentum expansions within an effective field theory approach based on Feynman amplitudes in harmonic coordinates. For these contributions we construct a canonical transformation to isotropic and to EOB coordinates at 5PN and agree with the results in the literature Bern:2019nnu,Damour:2019lcq. At 6PN we compare to the Hamiltonians in isotropic coordinates either given in Bern:2019nnu or resulting from the scattering angle. We find a canonical transformation from our Hamiltonian in harmonic coordinates to Bern:2019nnu, but not to Damour:2019lcq. This implies that we also agree on all observables with Bern:2019nnu to the sixth post--Newtonian order to G_N^3.

Machine-learning models trained directly on electronic spectra can predict spin--orbit-driven properties, yet models with comparable predictive accuracy may learn different electronic dependencies. We examine this problem using magnetic anisotropy in atomic-scale magnets and a validation strategy designed to assess the physical relevance of learned spectral relationships. We compare a bidirectional gated recurrent unit and a one-dimensional convolutional neural network, both trained to predict magnetic anisotropy energy (MAE) from spin- and orbital-resolved scalar-relativistic densities of states (SR-DOS). Despite comparable in-domain (ID) accuracy, the architectures learn only partly overlapping spectral dependencies. Shapley additive explanations identify spectral features shared between the two architectures that can be associated with plausible spin--orbit-coupling pathways consistent with second-order perturbation theory (PT2). Adding PT2-derived MAE contributions to the model inputs has little effect on ID performance but can improve transfer beyond the training domain, with gains differing between architectures. Controlled spectral perturbations further demonstrate that similar attribution patterns do not imply the same functional dependence of the predicted MAE on spectral weight. The contrasting responses provide a functional context for architecture-dependent out-of-domain transfer. End-to-end learning can identify candidate electronic signatures of magnetic anisotropy. Their credible microscopic interpretation, however, rests on convergent evidence from predictive performance, model comparison, physical theory, controlled spectral interventions, and evaluation under distribution shift.

Predicting single-cell responses to genetic and chemical perturbations is important for understanding regulatory mechanisms and prioritizing therapeutic interventions. Existing methods have made progress by modeling perturbation-conditioned expression shifts with neural networks, graph priors, foundation-model representations, or distributional generative models. However, combinatorial perturbation prediction remains challenging because much of the response can be explained by additive single-perturbation effects, while the biologically informative signal often lies in a smaller non-additive residual induced by perturbation interactions. Directly generating the full post-perturbation expression profile may therefore allocate substantial capacity to the dominant additive component and underemphasize synergy-specific structure. To address this issue, we propose SynGeneFlow, a synergy-aware flow matching framework that anchors the source distribution at an additive prior and learns a residual flow toward the true perturbed state. SynGeneFlow further incorporates perturbation-conditioned gene interaction modeling, where a static gene-gene mask provides biological structure and a perturbation-dependent deformation bias dynamically modulates gene-gene coupling. To preserve population-level response structure, we align both endpoint distributions and biological residual distributions with MMD-based regularization. We evaluate SynGeneFlow on genetic and drug perturbation benchmarks under observed-single, held-out, and cross-modality settings. The results demonstrate that residualizing flow matching around additive perturbation effects provides a biologically grounded and robust framework for single-cell perturbation response prediction.

We present a non-perturbative framework for the quantum treatment of vibrational excitation in molecular systems driven by electric fields with arbitrary time dependence. For harmonic potentials with linear dipole coupling, the field-induced dynamics is exactly described by a displaced coherent state, whose evolution is completely determined by a complex phase-space coordinate. Closed-form expressions for this coordinate reveal a clear distinction between resonant and non-resonant regimes. The resulting vibrational populations follow a Poisson distribution determined by a dimensionless time-dependent phase-space displacement, for both resonant and non-resonant driving. Resonant driving results in an enhanced phase-space displacement, whereas finite detuning between the driving and vibrational frequencies leads to an exponential suppression of the phase-space displacement and vibrational excitation. While the approach reduces to the standard time-dependent perturbation theory in the weak-field limit, it remains valid in the strong-field regime, where perturbative treatments fail. Our results provide a transparent phase-space picture of vibrational control and enable non-perturbative state preparation in ultrafast spectroscopy.

Building upon a thermodynamic formalism, we show that self-gravitating systems in hydrostatic equilibrium with a uniform density are maximal entropy states when submitted to perturbations which are slow on dynamical timescale. We coin this phenomenon "thermodynamic blocking", given its similarity with the more general "kinetic blocking". This result underlines the importance of the thermodynamic formalism which proves useful when kinetic equations break down.

We develop a linear perturbative formalism to compute the response of an inhomogeneous stellar disk embedded in a non-responsive dark matter halo to perturbations like bars, spiral arms and satellite galaxy encounters. Without self-gravity to reinforce it, the response of a Fourier mode phase mixes away due to an intrinsic spread in the vertical (Omega_z), radial (Omega_r) and azimuthal (Omega_phi) frequencies, giving rise to local phase-space spirals. Collisional diffusion due to scattering of stars by structures like giant molecular clouds causes super-exponential damping of the phase-spiral amplitude. The z-v_z phase-spiral is 1-armed (2-armed) for vertically anti-symmetric (symmetric) bending (breathing) modes. Only transient perturbations with timescales (tau_{P}) comparable to the vertical oscillation period (tau_z sim 1/Omega_z) trigger z-v_z phase-spirals. Each (n,l,m) mode of the response to impulsive (tau_{P}<tau=1/(nOmega_z+lOmega_r+mOmega_phi)) perturbations is power law (sim tau_{P}/tau) suppressed, but that to adiabatic (tau_{P}>tau) perturbations is exponentially weak (sim left[-left(tau_{mathrm{P}/tauright)^alpharight]}) except resonant (tauto infty) modes. Slower (tau_{P}>tau_z) perturbations, e.g., distant encounters with satellite galaxies, induce stronger bending modes. If the Gaia phase-spiral was triggered by a satellite, Sagittarius is the leading contender as it dominates the Solar neighborhood response of the Milky Way disk to satellite encounters. However, survival against collisional damping necessitates that the impact occurred within sim 0.6-0.7 Gyr ago. We discuss how the detailed galactic potential dictates the phase-spiral shape: phase mixing occurs slower and phase-spirals are less wound in the outer disk and in presence of an ambient halo.

The Redfield equation with time-dependent coefficients (or TCL2 equation) gives one of the simplest perturbative descriptions of open quantum system dynamics derived from a microscopic theory. Its status as an approximation is nevertheless subtle: while perturbation theory fixes the reduced dynamics order-by-order in the system-environment coupling, solving the Redfield equation yields a particular resummation that need not preserve complete positivity. Here we compare Redfield evolution with an exponentiated (Magnus) resummation of the same second-order perturbative map, which is completely positive and trace preserving (CPTP) for a broad class of physical conditions. We also construct a simple CPTP resolvent resummation, illustrating the non-uniqueness of resummations of the same perturbative map. The Redfield and Magnus prescriptions agree to second order but differ through time-ordering corrections at higher orders. We exhibit a weak-coupling criterion which guarantees that Redfield evolution, even when non-Markovian, remains close to a CPTP map. We illustrate the criterion in two examples, focusing on finite-dimensional (qubit) systems. Our results clarify when, and why, Redfield evolution can remain reliable even when it is highly non-Lindbladian.

Ensemble Kalman Inversion (EKI) is a derivative-free, ensemble-based method for inverse and optimization problems. Its continuous-time formulation can be interpreted as an interacting particle system driven by a Kalman-type preconditioned descent direction. A well-known limitation of this dynamics is the possible premature collapse of the covariance of the ensemble, which makes the method sensitive to the initial ensemble. We introduce a second-order particle system in which the particles evolve according to an inertial dynamics. The model combines a Kalman-type relaxation force with damping, attraction towards the ensemble mean, and a short-range repulsive interaction designed to counteract ensemble collapse. The resulting dynamics can be interpreted as a heavy-ball reformulation of continuous-time EKI enriched by competing attractive and repulsive mechanisms. For linear inverse problems, we analyze the induced mean and fluctuation dynamics and identify a parameter regime in which fully collapsed configurations are linearly unstable. We further characterize asymptotic equilibria through a constrained optimality condition on the subspace retained by the limiting ensemble covariance and derive an exponential decay estimate. Numerical experiments illustrate the effect of inertia and repulsion on the ensemble dynamics and compare the proposed second-order method with first-order EKI-type

As the demand to integrate Artificial Intelligence into high-stakes environments continues to grow, explaining the reasoning behind neural-network predictions has shifted from a theoretical curiosity to a strict operational requirement. Our work is motivated by the explanations of autoregressive neural predictions on dynamic physical fields, as in weather forecasting. Gradient-based feature attribution methods are widely used to explain the predictions on such data, in particular due to their scalability to high-dimensional inputs. It is also interesting to remark that gradient-based techniques such as SmoothGrad are now standard on images to robustify the explanations using pointwise averages of the attribution maps obtained from several noised inputs. Our goal is to efficiently adapt this aggregation strategy to dynamic physical fields. To do so, our first contribution is to identify a fundamental failure mode when averaging perturbed attribution maps on dynamic physical fields: stochastic input perturbations do not induce stationary amplitude noise in attribution maps, but instead cause a geometric displacement of the attributions. Consequently, pointwise averaging blurs these spatially misaligned features. To tackle this issue, we introduce WassersteinGrad, which extracts a geometric consensus of perturbed attribution maps by computing their entropic Wasserstein barycenter. The results, obtained on regional weather data and a meteorologist-validated neural model, demonstrate promising explainability properties of WassersteinGrad over gradient-based baselines across both single-step and autoregressive forecasting settings.

We study the relation between equal-weight circle quadrature, Gauss--Chebyshev quadrature, and planar Minkowski reconstruction. The regular N-point grid is an mathbb S^1-design of strength N-1; a half-step rotation of the 2M-point grid projects to the classical M-point Gauss--Chebyshev rule. A common family of quadrature-error functionals gives exact identities for integration error, mixed-area error, and support-function error. For Nge3, the centered Minkowski polygon P_N with perimeter 2π has the exact Hausdorff distance from the unit disk B^2 \[ d_H(P_N,B^2)=1-\fracπ{N}\cot\fracπ{N} =π^2{3N^2}+O(N^{-4}). \] With Steiner centering, we obtain d_H(K_μ,K_ν)leπW_1(μ,ν) for balanced, nondegenerate probability measures, where W_1 uses geodesic distance. Its exponent is sharp even for smooth positive densities near the uniform measure. The identity W_1(ν_N,σ)=π/(2N) yields a general O(N^{-1}) bound for the regular grid. The sharper O(N^{-2}) rate follows from the sparse discrepancy spectrum and the inverse multiplier (1-k^2)^{-1}. Finally, a perturbation estimate gives sufficient conditions for preserving the quadratic rate and its leading constant.

Reciprocity is a fundamental symmetry present in many natural phenomena and engineered systems. Distinct situations where this symmetry is broken are typically grouped under the umbrella term "nonreciprocity", colloquially defined by: the action of A on B neq the action of B on A. In this review, we elucidate what nonreciprocity is by providing an introduction to its most salient classes: nonvariational dynamics, violations of Newton's third law, broken detailed balance, nonreciprocal responses and nonreciprocity of arbitrary linear operators. Next, we point out where to find these manifestations of non-reciprocity, from ensembles of particles with field mediated interactions to synthetic neural networks and open quantum systems. Given this breadth of contexts and the lack of an all-encompassing definition, it makes it all the more intriguing that some general conclusions can be gathered, when distinct definitions of nonreciprocity overlap. We explore what these universal consequences are with a special emphasis on collective phenomena that arise in nonreciprocal many-body systems. The topics covered include nonreciprocal phase transitions and non-normal amplification of noise and perturbations. We conclude with some open questions.

We develop analytical and particle-based methods for uncertainty propagation in random neural network models, where both the inputs and network parameters are allowed to be random. Building on the piecewise-linear structure of the Leaky ReLU activation function, we derive a local approximation of the neural network output with respect to perturbations in both its inputs and parameters. This approximation is exact for perturbations that preserve the network activation pattern, and it allows us to compute analytical expressions for the probability density function and characteristic function of the network output, together with closed-form approximations for its mean and covariance. We extend this uncertainty propagation framework to autonomous dynamical systems whose one-step evolution map is represented by a random neural network. Repeated application of this map defines an autoregressive model, for which we derive recursive equations to propagate uncertainty in both the state and network parameters over time. These equations explicitly account for the state-parameter cross-covariance that develops under successive iterations of the network. Numerical experiments on the Lorenz-63 system and the Kuramoto-Sivashinsky equation demonstrate accurate uncertainty propagation through the predictability horizon and the applicability of the proposed framework to high-dimensional dynamical systems.

In this paper, both the pointwise space-time structures of the solution for a three-dimensional model describing gas dynamics in thermal non-equilibrium and the corresponding background stabilities within the L^p framework are investigated under the small initial perturbation assumption and the irrotationality condition. Our main tools are the modified Green's function according to the irrotationality condition, a priori energy method and a refined decay estimates of products composed of the entropy function and high-order derivatives.

Predicting transcriptome-wide responses to unseen genetic perturbations remains a major computational challenge because accurate prediction requires recovering both perturbation-specific transcriptional shifts and heterogeneous cellular responses. Existing methods often entangle deterministic response structure with stochastic population-level variation, causing dominant shared patterns to mask weaker perturbation-specific signals and impair distributional modeling. To address these challenges, we propose DeMixPert, an approach for Decomposed response Modeling with Gaussian Mixtures for Out-Of-Distribution (OOD) single-cell Perturbation prediction. DeMixPert decomposes perturbation-induced changes into a basal-state-dependent systematic response, a perturbation-specific response, and population-level variation. The systematic component is derived from the basal state encoded from control-cell expression, whereas the perturbation-specific component is inferred from pretrained target embeddings for unseen-target generalization. DeMixPert models population-level variation using a Gaussian prototype Invertible Network and adaptively combines reusable Gaussian prototypes according to the basal state and perturbation condition. The resulting mixture is mapped to a condition-specific variation distribution. Sampled variations are integrated with the systematic and perturbation-specific components, followed by joint decoding with the basal state to reconstruct perturbed-cell gene expression. Experimental results show that DeMixPert effectively captures heterogeneous single-cell perturbation responses and achieves superior performance across unseen-perturbation settings. The source code is made publicly available upon publication.

We investigate modified gravity with quadratic curvature terms (R^2, R_{AB}R^{AB}, and R_{ABCD}R^{ABCD}). In this framework, the geometry of the extra dimensions is determined by the higher-dimensional field equations together with auxiliary conditions. For inhomogeneous metrics, we derive new stability conditions under radion excitations. The central result is that stable solutions satisfying these conditions are not isolated: a typical stable regular metric belongs to a continuous family of stable metrics in its immediate neighbourhood. Since the effective four-dimensional physical parameters depend on the extra-dimensional geometry, this geometrical landscape of stable metrics induces a continuous landscape of effective four-dimensional parameters. Transitions between distinct static solutions within the landscape cannot be induced by spatially localized perturbations, whose asymptotic decay (|x|toinfty) preserves the boundary data distinguishing the states. We also note a possible topological transition from a two-brane to a one-brane configuration, associated with a change in the number of regular zeros of the metric function r(u).

We examine the geometry of neural network training using the Jacobian of trained network parameters with respect to their initial values. Our analysis reveals low-dimensional structure in the training process which is dependent on the input data but largely independent of the labels. We find that the singular value spectrum of the Jacobian matrix consists of three distinctive regions: a "chaotic" region of values orders of magnitude greater than one, a large "bulk" region of values extremely close to one, and a "stable" region of values less than one. Along each bulk direction, the left and right singular vectors are nearly identical, indicating that perturbations to the initialization are carried through training almost unchanged. These perturbations have virtually no effect on the network's output in-distribution, yet do have an effect far out-of-distribution. While the Jacobian applies only locally around a single initialization, we find substantial overlap in bulk subspaces for different random seeds. Our code is available at https://github.com/EleutherAI/training-jacobian

The capacity to precisely edit genomes has outpaced our ability to predict the consequences. A cell can be genetically perfect and therapeutically useless: edited exactly as intended, yet unstable, drifting toward unintended fates, or selected for properties that compromise safety. This paradox reflects a deeper gap in how we evaluate biological intervention. Current frameworks excel at measuring what was done to a cell but remain blind to what the cell has become. We argue that this blindness stems from treating cells as collections of independent variables rather than as dynamical systems occupying positions on high-dimensional state manifolds. Drawing on Waddington's epigenetic landscape, we propose geometric stability as a missing axis of evaluation: the directional coherence of cellular responses to perturbation. This metric distinguishes interventions that guide cells coherently toward stable states from those that scatter them across the state manifold. Validation across diverse perturbation datasets reveals that geometric stability captures regulatory architecture invisible to conventional metrics, discriminating pleiotropic master regulators from lineage-specific factors without prior biological annotation. As precision medicine increasingly relies on cellular reprogramming, the question shifts from ``did the intervention occur?'' to ``is the resulting state stable?'' Geometric stability provides a framework for answering.

Outer-learning algorithms use infinitesimal sensitivities to propose finite changes to initialization or training parameters. For hard-ReLU training, the derivative of the finite program and the derivative of its flow limit do not by themselves specify the response at a chosen radius. We characterize the intervening regime in which the perturbation radius is proportional to the GD step. Integer event rounding then survives at leading order: smooth Euler bias shifts each discrete phase, and upstream rounding moves downstream branch boundaries. We derive the crossing indices and a uniform endpoint expansion for finitely many separated transverse events in piecewise-C^2 dynamics, away from recursive phase boundaries. In contractive affine regions, an explicit remainder and complete branch verification certify finite candidate comparisons. Scalar phase frequencies and a coupled feedback ablation test the mechanism; frozen nonlinear-network experiments show radius-dependent prediction accuracy, including incomplete branch matches and failed-word tails. Together with local AD and uniform flow consistency, the result identifies sufficient response regimes: differentiating training is a choice of perturbation resolution as well as a choice of derivative.

We construct an odd smooth initial density for the unforced incompressible porous media (IPM) equation on mathbb T^2 whose solution develops a finite-time blowup. The components partial_{x_2}ρ(t,0) and partial_{x_1}u_1(t,0) tend to +infty as the maximal smooth existence time is approached, while the density and velocity remain bounded in L^2. Starting from a stationary solution, we iterate the angular amplification of localized oscillations with rapidly growing frequencies, adapting the mechanism of Córdoba and Martínez-Zoroa [7] for forced IPM. Each perturbation is constructed from time zero and creates the geometry configuration for the next iteration stage. A one-sided upper bound for the pressure Hessian is applied to control backward preparation and initial perturbations, following an idea from the Euler construction of OpenAI [14].

Objective perturbation adds a random linear term to a regularized empirical risk and releases the exact perturbed minimizer. We study the finite computation obtained by releasing the N-th iterate of deterministic gradient descent on wmapsto F(w;S)+langle z,wrangle, where zsimmathcal N(0,σ^2I_d) is drawn once before optimization. For strongly convex and smooth objectives with Lipschitz Hessian, we prove an explicit condition under which the map zmapsto w_N is a C^1-diffeomorphism on the bounded domains used in the privacy argument, with a quantitative lower bound on the smallest singular value of its Jacobian. This permits a direct change-of-variables analysis of the finite iterate. For generalized linear models, the resulting privacy-profile bound has no explicit ambient-dimension factor once the iteration condition holds, and its finite-iteration correction decreases geometrically. By letting the free truncation parameter grow slowly with N, we recover the corresponding exact-minimizer certificate in the limit. We also bound the expected excess empirical risk by dσ^2/(2μ) plus a geometrically decreasing optimization term, and transfer the result to population risk without an additional multiplicative condition-number factor in the leading statistical terms.

We construct solutions to the two-dimensional stationary Prandtl system under a constant adverse pressure gradient exhibiting a family of distinct separation laws. More precisely, for every integer ellge1, we construct smooth initial data for which separation occurs at a finite location x=x^ast, with \[ \partial_y u(x,0) =\mathbf C_\ell(x^\ast-x)^{\ell/2}\bigl(1+o(1)\bigr), \qquad x\uparrow x^\ast, \] where mathbf C_ell>0 depends on the initial data. We determine the local asymptotic structure of the solution near separation through matched inner and outer expansions based on linearization around the ground state in von Mises variables. This description addresses Open Problem~5 posed by Oleinik and Samokhin~OleinikSamok-book-99. We also prove that the square-root separation regime, corresponding to ell=1, is dynamically stable under small admissible perturbations of the initial data in a suitable topology.

In this paper, we study the long time dynamics of small perturbations of static domain walls in weighted Sobolev spaces for the one dimensional Schrödinger map with constant Dzyaloshinskii-Moriya interaction. The perturbation equation contains derivative nonlinearities, and its linearized operator has a threshold resonance. The results are twofold. (i) We prove the asymptotic stability of the domain wall modulo the translation and rotation symmetries. More precisely, the corresponding modulation parameters converge as time tends to infinity, while the radiation decays at the sharp rate t^{-1/2}. (ii) We prove that the radiation exhibits modified scattering, with an explicit logarithmic phase correction generated by the long range cubic interaction. The proof develops geometric reduction to overcome the loss of derivatives and exploits structural cancellations in the nonlinear interactions.

Materials that undergo internal transformations are usually described in solid mechanics by multi-well energy functions that account for both elastic and transformational behavior. In order to separate the two effects, physicists use instead phase-field-type theories where conventional linear elastic strain is quadratically coupled to an additional field that describes the evolution of the reference state and solely accounts for nonlinearity. In this paper we propose a systematic method allowing one to split the non-convex energy into harmonic and nonharmonic parts and to convert a nonconvex mechanical problem into a partially linearized phase-field problem. The main ideas are illustrated using the simplest framework of the Peierls-Nabarro dislocation model.

We study the response of mono-energetic stellar populations with initially isotropic kinematics to impulsive and adiabatic changes to an underlying dark matter potential. Half-light radii expand and velocity dispersions decrease as enclosed dark matter is removed. The details of this expansion and cooling depend on the time scale on which the underlying potential changes. In the adiabatic regime, the product of half-light radius and average velocity dispersion is conserved. We show that the stellar populations maintain centrally isotropic kinematics throughout their adiabatic evolution, and their densities can be approximated by a family of analytical radial profiles. Metallicity gradients within the galaxy flatten as dark matter is slowly removed. In the case of strong impulsive perturbations, stellar populations develop power-law-like density tails with radially biased kinematics. We show that the distribution of stellar binding energies within the dark matter halo substantially widens after an impulsive perturbation, no matter the sign of the perturbation. This allows initially energetically separated stellar populations to mix, to the extent that previously chemo-dynamically distinct populations may masquerade as a single population with large metallicity and energy spread. Finally, we show that in response to an impulsive perturbation, stellar populations that are deeply embedded in cored dark matter halos undergo a series of damped oscillations before reaching a virialised equilibrium state, driven by inefficient phase mixing in the harmonic potentials of cored halos. This slow return to equilibrium adds substantial systematic uncertainty to dynamical masses estimated from Jeans modeling or the virial theorem.

Understanding the training dynamics of deep neural networks remains a major open problem, with physics-inspired approaches offering promising insights. Building on this perspective, we develop a thermodynamic framework to describe the stationary distributions of stochastic gradient descent (SGD) with weight decay for scale-invariant neural networks, a setting that both reflects practical architectures with normalization layers and permits theoretical analysis. We establish analogies between training hyperparameters (e.g., learning rate, weight decay) and thermodynamic variables such as temperature, pressure, and volume. Starting with a simplified isotropic noise model, we uncover a close correspondence between SGD dynamics and ideal gas behavior, validated through theory and simulation. Extending to training of neural networks, we show that key predictions of the framework, including the behavior of stationary entropy, align closely with experimental observations. This framework provides a principled foundation for interpreting training dynamics and may guide future work on hyperparameter tuning and the design of learning rate schedulers.

We investigate the spectral statistics of random perturbations of semiclassical Schrödinger operators on compact manifolds, near energy levels corresponding to chaotic classical dynamics. The prototypical example is that of an operator h^2Δ+V(x) that is perturbed by a smooth potential h^αV_ω with αin (0,1), and V_ω is a random potential that decorrelates on distances h^β, with 0<β<2α. We show that for a generic perturbation, the spectral fluctuations of the smoothed counting function of eigenvalues obey a universal behavior at a certain mesoscopic scale, which is coherent with the predictions of random matrix theory.

Molecular dynamics (MD) simulations model the motion of proteins between conformational states, but crossing free energy barriers and sampling multiple thermodynamic conditions remain computationally costly. We recently introduced MD-LLM-1, which showed that language models can generate conformational trajectories at lower cost, but required a separate model for each protein and did not explicitly model thermodynamics or kinetics. Here we introduce MD-LLM-2, a transferable language model that generates trajectories conditioned on sequence, temperature and molecular history. Because each step defines a normalized distribution over structural tokens, the model assigns an explicit likelihood to every generated or simulated trajectory. Trained across mdCATH domains, MD-LLM-2 reproduces the median radius of gyration of MD within 1 Angstrom in 10 of 12 unseen domains, predicts reduced Trp-cage compaction at higher temperature, and generates L99A T4 lysozyme trajectories that reach published transition-region backbone structures. In alanine dipeptide simulations, conditioning on a torsional scaling parameter λ predicts basin populations at unseen couplings with a mean absolute error of 0.09 versus 0.35 for MBAR, and first-passage probabilities with an error of 0.08 versus 0.16 for a reversible Markov state model. Frame-isoentropic sampling further limits the accumulation of errors during autoregressive trajectory generation. Together, these results extend MD-LLM from protein-specific trajectory generation to transferable, physically conditioned modelling with explicit path likelihoods, and show that the framework can predict equilibrium populations for force-field parameters not seen during training, with an initial indication that first-passage kinetics can also be captured.

We introduce rd-spiral, an open-source Python library for simulating 2D reaction-diffusion systems using pseudo-spectral methods. The framework combines FFT-based spatial discretization with adaptive Dormand-Prince time integration, achieving exponential convergence while maintaining pedagogical clarity. We analyze three dynamical regimes: stable spirals, spatiotemporal chaos, and pattern decay, revealing extreme non-Gaussian statistics (kurtosis >96) in stable states. Information-theoretic metrics show 10.7% reduction in activator-inhibitor coupling during turbulence versus 6.5% in stable regimes. The solver handles stiffness ratios >6:1 with features including automated equilibrium classification and checkpointing. Effect sizes (delta=0.37--0.78) distinguish regimes, with asymmetric field sensitivities to perturbations. By balancing computational rigor with educational transparency, rd-spiral bridges theoretical and practical nonlinear dynamics.

Rate-induced tipping ("R-tipping") in ecological modelling is characterised by too-rapid change of an environmental parameter causing collapse of a population without any bifurcation being crossed ("B-tipping"). A well-known example of a slow-fast predator-prey model in which R-tipping is observed [Vanselow, Wieczorek, Feudel, Journal of Theoretical Biology, 479, 64-72 (2019)] suffers from unecological "resurgence", whereby populations driven to functional extinction recover towards stable coexistence. We propose an analytically tractable model, incorporating a strong Allee effect into the prey dynamics in a slow-fast Lotka-Volterra-type predator-prey system, which induces bistability and thus renders the extinction state a genuine attractor. Applying geometric singular perturbation theory (GSPT), we describe the dynamics of the extended model that is obtained by "ramping" of the inverse prey carrying capacity. We show the presence of a parabolic-shaped, folded critical manifold which admits a folded saddle singularity, the strong canard of which separates solutions that track the moving coexistence state from those that tip to extinction. The analytical simplicity of our model allows us to derive explicit expressions for the critical rate that separates "tracking" from "tipping" dynamics. Finally, we argue that our system represents a minimal model for rate-induced tipping to extinction, in that it incorporates three essential ingredients: bistability, a folded critical manifold, and a folded-saddle-type canard.

We develop a learning-based framework for constructing shrinking disturbance-invariant tubes under state- and input-dependent uncertainty, intended as a building block for tube Model Predictive Control (MPC), and certify safety via a lifted, isotone (order-preserving) fixed-point map. Gaussian Process (GP) posteriors become (1-α) credible ellipsoids, then polytopic outer sets for deterministic set operations. A two-time-scale scheme separates learning epochs, where these polytopes are frozen, from an inner, outside-in iteration that converges to a compact fixed point Z^star!subseteq!mathcal G; its state projection is RPI for the plant. As data accumulate, disturbance polytopes tighten, and the associated tubes nest monotonically, resolving the circular dependence between the set to be verified and the disturbance model while preserving hard constraints. A double-integrator study illustrates shrinking tube cross-sections in data-rich regions while maintaining invariance.

This study introduces amangkurat, an open-source Python library designed for the robust numerical simulation of relativistic scalar field dynamics governed by the nonlinear Klein-Gordon equation in (1+1)D spacetime. The software implements a hybrid computational strategy that couples Fourier pseudo-spectral spatial discretization with a symplectic Størmer-Verlet temporal integrator, ensuring both exponential spatial convergence for smooth solutions and long-term preservation of Hamiltonian structure. To optimize performance, the solver incorporates adaptive timestepping based on Courant-Friedrichs-Lewy (CFL) stability criteria and utilizes Just-In-Time (JIT) compilation for parallelized force computation. The library's capabilities are validated across four canonical physical regimes: dispersive linear wave propagation, static topological kink preservation in phi-fourth theory, integrable breather dynamics in the sine-Gordon model, and non-integrable kink-antikink collisions. Beyond standard numerical validation, this work establishes a multi-faceted analysis framework employing information-theoretic entropy metrics (Shannon, Rényi, and Tsallis), kernel density estimation, and phase space reconstruction to quantify the distinct phenomenological signatures of these regimes. Statistical hypothesis testing confirms that these scenarios represent statistically distinguishable dynamical populations. Benchmarks on standard workstation hardware demonstrate that the implementation achieves high computational efficiency, making it a viable platform for exploratory research and education in nonlinear field theory.

We prove nonlinear stability of the Guderley imploding shock under radial perturbations for the three-dimensional compressible Euler equations in the adiabatic range 1<γleq5{3}. The perturbed solutions develop an asymptotically self-similar implosion in finite time. Our result allows perturbations with small, nonzero constant pressure in the quiescent region ahead of the shock. The proof combines weighted L^infty estimates along characteristics with a computer-assisted proof of stability inequalities for the Guderley profile.

We develop a perturbative framework for systems coupled quadratically to bosonic environments with quadratic Hamiltonians and linear Lindblad operators. The method applies to both single-mode and multimode environments whose initial states may be non-Gaussian and nonstationary. By combining linear evolution in a doubled operator space with a characteristic-function representation, we express ordered multitime environmental correlation functions in terms of derivatives of the initial characteristic function. These correlation functions enter a recursive construction of the time-convolutionless generator at arbitrary finite order. We illustrate the method with a qubit coupled to a damped mode via a two-photon interaction. Initial Fock and thermal states with identical first and second field moments produce different second-order generators through their fourth moments.

We prove strong ill-posedness for the two-dimensional incompressible Euler equation in the endpoint velocity space W^{3,1}_σ(mathbb R^2). Given any compactly supported smooth divergence-free background and any δ>0, we construct a single compactly supported divergence-free datum within δ of the background in W^{3,1}. The perturbation can be localized inside any prescribed nonempty open neighborhood of the background support while remaining disjoint from that support. The associated unique global finite-energy solution u satisfies {rm curl} uin C([0,infty);W^{2,1}(mathbb R^2)), but \[ \operatorname*{ess\,sup}_{0<t<T}\|u(t)\|_{W^{3,1}}=\infty \qquadfor every T>0. \] The proof combines localized hyperbolic insertion, the Bonami--Poornima nonmultiplier mechanism, and many-packet dilution. Moment cancellation and positive material separation control the nonlocal Biot--Savart interactions, allowing a nested construction inside one fixed compact region. Without the compact-support requirement on the limiting datum, a complementary far-field argument yields a dense G_δ set of data whose solutions leave W^{3,1} at every positive rational time and on a residual set of times, with unbounded essential supremum on every nonempty open time interval.

Large language models can answer scientific questions, yet a correct output does not reveal whether the model represents or uses the governing physics. Here we show that materials science mechanism information in the open-weight google/gemma-4-E4B-it model has three experimentally separable forms: concepts are readable in individual hidden states, constitutive orientation is carried by controlled transformations between states, and selected internal representations causally control engineering answers. We combine matched direct and Jacobian vocabulary readouts, option-free state geometry, a 60-law counterfactual benchmark and causal interventions. In 50 held-out materials descriptions, three independently fitted Jacobian lenses reproduced concept ranks, and target-free word sets from both readouts enabled blinded identification of 9 of 10 mechanism families. A separate 72-prompt benchmark produced mechanism-specific hidden-state neighborhoods, but an exact graph audit showed that this apparent physical organization was equally explained by numerical comparison. We therefore compared otherwise identical prompts in which only the direction of the physical input was reversed, asking whether the resulting hidden-state movement followed the supplied constitutive law. These state transformations ordered direct, physically neutral and inverse laws across 60 frozen relations and correctly oriented 39 of 40 directional laws, whereas lexical controls were near chance. Bidirectional interventions shifted answer probabilities toward or away from the physically appropriate outcome across all 12 matched cases, while counterfactual state patches transferred opposing decision signals across mechanisms and answer formats. Physical relationships were therefore more visible in controlled state changes than in absolute states alone.

Entropically driven fluid-solid transitions in monodisperse, purely repulsive hard spheres (MPRHS) are well established in theory, simulation, and experiment for atomic and colloidal systems. For MPRHS, however, coexistence is usually located via bulk free-energy calculations; the underlying microscopic balance between configurational and vibrational entropy is left implicit. Frenkel clarified this mechanism explicitly as an exchange of long-range configurational entropy for short-range vibrational entropy, but in the pristine MPRHS limit the nucleation barrier near coexistence is so high that phase separation is predicted only on astronomical time scales. Consistent with this, even unbiased simulations do not show spontaneous, equilibrium fluid-crystal coexistence; transient mixtures are mostly overtaken by a single phase; observed coexistence is still algorithmically-driven. Nearly hard-sphere colloid experiments do observe fluid-crystal coexistence, but always in the presence of unavoidable triggers such as gravity, walls, and polydispersity. We treat the hard-sphere phase diagram as settled and ask how the entropic exchange mechanism can be revealed in nearly hard-sphere colloidal simulations. We probe the mechanism on finite time scales by introducing minimal perturbations that trigger phase separation: small reductions in hardness that increase locally accessible free volume (and thus gently increase vibrational entropy), and 2-4% distributed crystal seeds. These perturbations produce coexisting fluid and crystal domains with crystal fraction, phase envelope and osmotic pressure that, with systematically increasing particle hardness, approach the hard-sphere limit. These results demonstrate that slight enhancements to vibrational entropy provide a dynamically accessible route to realizing the long-range/short-range entropy exchange required for phase separation.

We establish nonlinear stability of three-dimensional Couette flow for the incompressible Navier--Stokes equations on mathbb Ttimesmathbb R^2. Divergence-free perturbations satisfying |u_{rm in}|_{H^2}+|u^perp_{0,rm in}|_{dot B^{-2}_{2,infty}}leq c_*ν generate unique global H^2 solutions that remain close to Couette flow, where u^perp_{0,rm in} denotes the streamwise average of the transverse velocity. This result retains the O(ν) stability threshold despite the absence of a spanwise spectral gap. The nonzero streamwise modes exhibit enhanced dissipation, their wall-normal component satisfies a viscosity-uniform time-integrated inviscid-damping estimate, and the transverse zero mode decays in L^2 at rate (1+νt)^{-1}. The endpoint space dot B^{-2}_{2,infty} controls the transverse low frequencies, accommodates divergence-form nonlinear forcing, and is critical for linear lift-up from the wall-normal zero mode. The proof combines propagation of this endpoint norm, Fourier splitting, and a two-level roll-to-streak representation with an adaptation of the nonzero-mode framework of Wei--Zhang (CPAM, 2021).

Guided diffusion samplers are increasingly used to reconstruct physical fields from sparse observations, but standard diagnostics do not say how much of the reconstruction was actually determined by the data. We introduce effective data resolution for black-box generative posteriors: a comparison between the resolution warranted by the inverse problem, dof_{ref}, and the resolution realised by the sampler, dof_{samp}. A perturbation estimator measures dof_{samp} and the spatial map R(x,x) from sampler queries alone. We validate the estimator against exact references and use it to study guided diffusion. The resulting measurements show that guidance weight can strongly alter apparent information transfer, that mean, spread and resolution are not jointly corrected by one weight even with an exact prior and score, and that resolution fidelity does not follow reliably from the apparent principledness of a guidance rule.

We update predictions for observables in the "delicate" D3/anti-D3 inflationary model on the conifold. We use a full CMB likelihood calculation to assess goodness-of-fit, which is necessary because in this model the zeta power spectrum often cannot be modelled as a power-law over observable scales. For the first time we are able to provide accurate forecasts for the amplitude of three-point correlations. In a significant portion of its parameter space the model follows Maldacena's single-field prediction fNL ~ -(5/12)(ns-1) if nt << 1. Therefore |fNL| is usually small when the power spectrum satisfies observational constraints. In a small number of cases the bispectrum is instead dominated by effects from rapid switching between angular minima. The resulting amplitudes are larger, but mostly with unacceptable spectral behaviour. In the most extreme case we obtain |fNLeq| ~ 75 at kt/3 = 0.002/Mpc. It has been suggested that the quasi-single field inflation ("QSFI") mechanism could produce significant 3-point correlations in this model. We do observe rare shifts in amplitude between equilateral and squeezed configurations that could possibly be associated with QSFI effects, but more investigation is needed to establish the full bispectrum shape. There is evidence of "shape" running between equilateral and squeezed configurations that may be inherited from the scale dependence of the spectrum. We explore the dependence of observables on discrete choices such as the truncation point of the potential. Our analysis illustrates the advantages of a standard format for information exchange within the inflationary model-building and testing community.

The thermal noise of mirror coatings for gravitational-wave detectors critically depends on the elastic properties of the constituent materials. Data analyses and theoretical models typically assume each material is homogeneous and isotropic, but isotropy has never been explicitly verified. Using Brillouin light scattering (BLS), we demonstrate for the first time that ion-beam-sputtered SiO2 -- a material still viable for future mirror coatings -- exhibits cylindrical elastic symmetry, with in-plane isotropy but a notable 6% compressive anisotropy along the film normal. This anisotropy remains unchanged after the post-deposition heat treatment currently used in ground-based detectors (500 ^circC, 10 h) but is nearly eliminated at 900 ^circC. Infrared reflectivity experiments support these findings by directly revealing heterogeneities in the distribution of bridging and non-bridging oxygen structures along the growth axis. While BLS measures the real part of the elastic constants at GHz frequencies, the data reveal negligible contributions from mechanical relaxations in the kHz-GHz range, making BLS a valid substitute for low-frequency properties obtained from standard anisotropy-insensitive techniques. Our results highlight that restoring isotropy through heat treatment -- by softening the material, enabling more than 7% out-of-plane expansion, and smoothing out structural heterogeneities -- may play a key role in reducing thermal noise. This proof-of-concept study extends beyond silica, providing critical insights for the design of future coatings.

Training deep neural networks for classification often includes minimizing the training loss beyond the zero training error point. In this phase of training, a "neural collapse" behavior has been observed: the variability of features (outputs of the penultimate layer) of within-class samples decreases and the mean features of different classes approach a certain tight frame structure. Recent works analyze this behavior via idealized unconstrained features models where all the minimizers exhibit exact collapse. However, with practical networks and datasets, the features typically do not reach exact collapse, e.g., because deep layers cannot arbitrarily modify intermediate features that are far from being collapsed. In this paper, we propose a richer model that can capture this phenomenon by forcing the features to stay in the vicinity of a predefined features matrix (e.g., intermediate features). We explore the model in the small vicinity case via perturbation analysis and establish results that cannot be obtained by the previously studied models. For example, we prove reduction in the within-class variability of the optimized features compared to the predefined input features (via analyzing gradient flow on the "central-path" with minimal assumptions), analyze the minimizers in the near-collapse regime, and provide insights on the effect of regularization hyperparameters on the closeness to collapse. We support our theory with experiments in practical deep learning settings.

We examine how closely pretrained LeWorldModel (LeWM) reproduces the effects of small action changes. Using matched simulator and model responses, we measure action sensitivity with Gram matrices at three perturbation scales. Across nearly a thousand states from Reacher and OGBench Cube, the most sensitive action directions differ by median angles of about 36^circ and 42^circ, respectively, at the smallest scale. Increasing the perturbation tenfold reduces median normalized Gram discrepancy by roughly 70\% on Reacher and 47\% on Cube. Geometry measured in pixels and embeddings varies more across scales than the chosen physical-state geometry. On held-out directions, environment Grams achieve median embedding response errors of 17\% and 28\%, compared with 26\% and 38\% for an isotropic reference with the same trace. LeWM's errors are higher at this scale. These findings support scale-specific evaluation of action sensitivity; its effect on control remains an open question.

We study resonance expansions and localised long-time dynamics for three-dimensional semiclassical Dirac operators. For smooth Hermitian matrix-valued perturbations which are analytic outside a compact set, we first obtain exponential cut-off resolvent bounds away from the resonance set and polynomial bounds in thin resonance-free rectangles adjacent to the real axis. Combining these estimates with a local Oc(h^{-3}) upper bound on the number of resonances, a pigeonhole selection of admissible contours, almost-analytic functional calculus, and a Cauchy--Green deformation, we derive resonance expansions for spectrally localised propagators. Positive-energy resonances contribute for large positive times, whereas negative-energy resonances contribute for large negative times. We then specialise to mass-type perturbations mbfβV(x) in a nontrapping energy window. Using the logarithmic resonance-free region established in our earlier work together with a quantitative FBI-transform/escape-function argument, we obtain a polynomial bound for the continued cut-off resolvent and deduce rapid local-energy decay. We subsequently refine this polynomial estimate by a finite-time propagation argument in the undistorted region. Introducing the maximal positive-sheet connection time T_χ associated with the spatial cutoff, we prove a geometric continued-resolvent estimate and, for every fixed M below the resonance-free depth constant, derive the explicit local-energy decay threshold T_N>T_χ+(N+1)/M. The same analysis gives a rigorous microlocal obstruction to a uniform [hlog(1/h)]^{-1} bound for the full distorted resolvent and identifies a finite-flight-time amplification mechanism for the sandwiched continued resolvent at logarithmic depth.

We examine whether the perturbative renormalization group (RG) regime of stochastic turbulence can be continued from small varepsilon to the physical value varepsilon_{phys}=2, corresponding to large-scale forcing. Exploiting the simplifications of the large-d limit, we calculate the correction exponent ω to five-loop order and find a simple structure suggesting a closed analytic form. This form implies that the fixed point stable near varepsilon=0 ceases to be simultaneously real and infrared stable before reaching varepsilon_{phys}=2, pointing to a possible change of infrared regime rather than a controlled perturbative RG extrapolation.

I investigate the spontaneous-fission (SF) half-lives of ^{254,256}Rf within the multidimensionally constrained relativistic Hartree-Bogoliubov (MDC-RHB) model combined with the local quasiparticle random-phase approximation (LQRPA) method. The collective inertia is evaluated using the finite-amplitude method (FAM), which enables a fully self-consistent treatment of dynamical residual effects beyond the conventional cranking approximation. The effective collective potential is constructed by subtracting both the vibrational zero-point energy and rotational energy correction from the deformation energy surface. The SF half-lives are evaluated within the Wentzel-Kramers-Brillouin (WKB) approximation. Compared with the nonperturbative and perturbative cranking approximation, the FAM-LQRPA collective inertia is significantly enhanced, especially around the ground-state minimum, due to the dynamical residual interaction included in the QRPA. As a consequence, the predicted SF half-lives increase by several orders of magnitude and become consistent with experimental data. The calculated SF half-lives are 5.65 μs for ^{254}Rf and 0.95 ms for ^{256}Rf, both within approximately two orders of magnitude of the corresponding experimental values. These results indicate that a self-consistent treatment of dynamical residual effects and beyond mean-field correlations is crucial for quantitative microscopic descriptions of SF within covariant density functional theory.

We study the mixing between a generic axion-like particle (ALP) and the light pseudoscalar mesons within chiral perturbation theory (χPT), and its consequences for low-energy scattering and decay processes. Starting from the most general ALP effective Lagrangian, we derive the ALP-meson kinetic and mass mixing induced at leading order in the ALP decay constant and isospin breaking for arbitrary ALP masses. As a result, we obtain the physical ALP mass to O(F^2/f_a^2), recovering the QCD-axion limit and finding that any ALP with a vanishing bare mass shares the QCD-axion mass. We provide a compact parameterization of every four-body amplitude involving pseudoscalar mesons and an arbitrary number of ALPs. As an illustration, we show the KKto P^0a scattering. The framework applies for general ALP masses and couplings and consistently incorporates isospin breaking, essential for otherwise forbidden processes.

In this paper, we prove the existence of stationary pulse solutions for a bulk-surface reaction-diffusion system modeling cell polarization in two-dimensional domains. Using a singular perturbation method, we construct pulse solutions whose centers lie near non-degenerate critical points of a geometry-dependent potential expressed in terms of the Neumann Green's function, as formally predicted in watanabe2026. The main analytical difficulty arises from the half-Laplacian induced by the logarithmic singularity of the Green's function, resulting in algebraically rather than exponentially decaying inner solutions. Our analysis may also serve as a useful guide for applying singular perturbation methods to other bulk-surface type systems.

This study examines the performance of finite spin quantum batteries (QBs) using Heisenberg spin models with Dzyaloshinsky-Moriya (DM) and Kaplan--Shekhtman--Entin-Wohlman--Aharony (KSEA) interactions. The QBs are modeled as interacting quantum spins in local inhomogeneous magnetic fields, inducing variable Zeeman splitting. We derive analytical expressions for the maximal extractable work, ergotropy and the capacity of QBs, as recently examined by Yang et al. [Phys. Rev. Lett. 131, 030402 (2023)]. These quantities are analytically linked through certain quantum correlations, as posited in the aforementioned study. Different Heisenberg spin chain models exhibit distinct behaviors under varying conditions, emphasizing the importance of model selection for optimizing QB performance. In antiferromagnetic (AFM) systems, maximum ergotropy occurs with a Zeeman splitting field applied to either spin, while ferromagnetic (FM) systems benefit from a uniform Zeeman field. Temperature significantly impacts QB performance, with ergotropy in the AFM case being generally more robust against temperature increases compared to the FM case. Incorporating DM and KSEA couplings can significantly enhance the capacity and ergotropy extraction of QBs. However, there exists a threshold beyond which additional increases in these interactions cause a sharp decline in capacity and ergotropy. This behavior is influenced by temperature and quantum coherence, which signal the occurrence of a sudden phase transition. The resource theory of quantum coherence proposed by Baumgratz et al. [Phys. Rev. Lett. 113, 140401 (2014)] plays a crucial role in enhancing ergotropy and capacity. However, ergotropy is limited by both the system's capacity and the amount of coherence. These findings support the theoretical framework of spin-based QBs and may benefit future research on quantum energy storage devices.

Straight line equation y=mx with slope m, when singularly perturbed as ay^3+y=mx with a positive parameter a, results in S-shaped curves or S-curves on a real plane. As arightarrow 0, we get back y=mx which is a cumulative distribution function of a continuous uniform distribution that describes the occurrence of every event in an interval to be equally probable. As arightarrowinfty, the derivative of y has finite support only at y=0 resembling a degenerate distribution. Based on these arguments, in this work, we propose that these S-curves can represent maximum entropy uniform distribution to a zero entropy single value. We also argue that these S-curves are superposable as they are only parametrically nonlinear but fundamentally linear. So far, the superposed forms have been used to capture the patterns of natural systems such as nonlinear dynamics of biological growth and kinetics of enzyme reactions. Here, we attempt to use the S-curve and its superposed form as statistical models. We fit the models on a classical dataset containing flower measurements of iris plants and analyze their usefulness in pattern recognition. Based on these models, we claim that any non-uniform pattern can be represented as a singular perturbation to uniform distribution. However, our parametric estimation procedure have some limitations such as sensitivity to initial conditions depending on the data at hand.

Singularity Theory is used to comprehensively investigate the bifurcations of the steady-states of the traveling wave ODEs of the cubic-quintic Ginzburg-Landau equation (CGLE). These correspond to plane waves of the PDE. In addition to the most general situation, we also derive the degeneracy conditions on the eight coefficients of the CGLE under which the equation for the steady states assumes each of the possible quartic (the quartic fold and an unnamed form), cubic (the pitchfork and the winged cusp), and quadratic (four possible cases) normal forms for singularities of codimension up to three. Since the actual governing equations are employed, all results are globally valid, and not just of local applicability. In each case, the recognition problem for the unfolded singularity is treated. The transition varieties, i.e. the hysteresis, isola, and double limit curves are presented for each normal form. For both the most general case, as well as for various combinations of coefficients relevant to the particular cases, the bifurcations curves are mapped out in the various regions of parameter space delimited by these varieties. The multiplicities and interactions of the plane wave solutions are then comprehensively deduced from the bifurcation plots in each regime, and include features such as regimes of hysteresis among co-existing states, domains featuring more than one interval of hysteresis, and isola behavior featuring dynamics unrelated to the primary solution branch in limited ranges of parameter space.

The Perturbation Discrimination Score (PDS) is increasingly used to evaluate whether predicted perturbation effects remain distinguishable, including in Systema and the Virtual Cell Challenge. However, its behavior in high-dimensional gene-expression settings has not been examined in detail. We show that PDS is highly sensitive to the choice of similarity or distance measure and to the scale of predicted effects. Analysis of observed perturbation responses reveals that ell_1 and ell_2-based PDS behave very differently from cosine-based measures, even after norm matching. We provide geometric insight and discuss implications for future discrimination-based evaluation metrics.

Predicting transcriptional responses to specific perturbations is critical for understanding cellular regulatory mechanisms and accelerating drug discovery. Single-cell RNA sequencing destroys each measured cell, yielding only unpaired populations of control and perturbed cells. However, existing methods typically model perturbation prediction at the single-cell level and assume cell-to-cell correspondence, which conflicts with the unpaired nature of the observed data. To address this challenge, we propose PopPert, a framework that explicitly parameterizes population-level joint gene expression distributions for collective transcriptional state modeling. Given a control population distribution and a perturbation condition, PopPert predicts perturbation-induced changes in distribution parameters, eliminating the need for cell-level correspondence and reducing sensitivity to single-cell noise. To effectively capture gene co-expression patterns, PopPert leverages a low-rank Gaussian Copula to model cross-gene statistical dependencies and construct the joint gene expression distribution, additionally allowing sampling of synthetic perturbed single-cell profiles. Across multiple single-cell benchmarks spanning both genetic and chemical perturbations, PopPert achieves superior overall performance in differential expression recovery, perturbation effect estimation, and population-level distribution matching. These results establish population-level joint distribution learning as an effective paradigm for predicting transcriptional responses from unpaired single-cell populations. Code for PopPert is publicly available at https://github.com/whd1125/PopPert.

A cumulative variational framework for solid deformation is proposed. Its central organizing principle is the recursive combination of three structural components of one material body: a compatible Cosserat component, a distributed-incompatibility component, and a defect-source component. At any prescribed external condition these components constitute a combined material state. They are governed under common physical boundary and initial conditions and are coupled through one cumulative energy and the associated field equations. They are not separate boundary-value problems and need not appear in a prescribed temporal sequence. The cumulative character of the framework concerns the response of the combined state to variation of externally prescribed conditions. For the special case of an initially perfect body, loss of stability may produce successive branches with defect and then source participation. Such a sequence is a bifurcation property of the selected initial state and constitutive energy, rather than a defining hierarchy of the framework. A one-dimensional specialization illustrates structural bifurcation, residual deformation and residual stress produced by retained structure, dependence on the initial combined state, directional memory under reverse loading, parametric cumulative hysteresis, and changes of observable tangent stiffness associated with structural stabilization. A spatial extension introduces defect and source gradient terms and yields a size-dependent structural stability operator. For the stable quartic energy considered, the gradient terms regularize nonuniform perturbations but do not by themselves generate a finite-wavelength localization instability on an already stable three-component branch. The examples thereby distinguish consequences of the cumulative structure and energy from phenomena requiring additional constitutive evolution laws.

Large-amplitude molecular motions which occur during isomerization can cause significant changes in electronic structure. These variations in electronic properties can be used to identify vibrationally-excited eigenstates which are localized along the potential energy surface. This work demonstrates that nuclear quadrupole hyperfine interactions can be used as a diagnostic marker of progress along the isomerization path in both the HC14N/H14NC and DC15N/D15NC chemical systems. Ab initio calculations at the CCSD(T)/cc-pCVQZ level indicate that the hyperfine interaction is extremely sensitive to the chemical bonding of the quadrupolar 14N nucleus and can therefore be used to determine in which potential well the vibrational wavefunction is localized. A natural bonding orbital analysis along the isomerization path further demonstrates that hyperfine interactions arise from the asphericity of the electron density at the quadrupolar nucleus. Using the CCSD(T) potential surface, the quadrupole coupling constants of highly-excited vibrational states are computed from a one-dimensional internal coordinate path Hamiltonian. The excellent agreement between ab initio calculations and recent measurements demonstrates that nuclear quadrupole hyperfine structure can be used as a diagnostic tool for characterizing localized HCN and HNC vibrational states.

Along the way initiated by Carleo and Troyer [1], we construct the neural-network quantum state of transverse-field Ising model(TFIM) by an unsupervised machine learning method. Such a wave function is a map from the spin-configuration space to the complex number field determined by an array of network parameters. To get the ground state of the system, values of the network parameters are calculated by a Stochastic Reconfiguration(SR) method. We provide for this SR method an understanding from action principle and information geometry aspects. With this quantum state, we calculate key observables of the system, the energy, correlation function, correlation length, magnetic moment and susceptibility. As innovations, we provide a high efficiency method and use it to calculate entanglement entropy (EE) of the system and get results consistent with previous work very well.

Chirality plays an important role in many optical phenomena, and it is crucial to have efficient and accurate numerical algorithms to simulate solutions in this setting. In this paper, we discuss a High-Order Spectral method coupled to geometric regular perturbation theory, which results in just such a method. We view the chirality of the laterally periodic, constant permittivity/permeability structure as deviating from a background value, and demonstrate analyticity of the field scattered by a plane electromagnetic wave with respect to this deformation. This analyticity is not only with respect to chirality deformations of arbitrarily large real size, but also joint in the spatial variables. We also show how the High--Order Perturbation of Envelopes (HOPE) recursions, which we used to establish these results, can be implemented as a rapid, robust, and reliable numerical algorithm.

This paper deals with the formation and evolution of Mars' moons, Phobos and Deimos, assuming the dislocation of a larger progenitor as the origin of these moons. The study by Hyodo et al. (2022) argue that under somewhat simplistic modeling, the post-dislocation orbits of Phobos and Deimos inevitably collide within 10,000 years, leading to their mutual annihilation. These findings are based on N-body simulations, accounting for Mars' J_2 and J_4 gravitational perturbations and mutual perturbations between the moons. In this paper, we challenge these findings by extending their work. We incorporate important perturbations such as solar perturbations, Mars' axial precession and nutation, and its deformation along three axes. We also extend some of the hypotheses made by Hyodo et al. (2022) concerning the initial distribution of Phobos and Deimos after the dislocation. Our analysis reveals that including these additional perturbations as well as the possibility of having more than two fragments after the dislocation does not alter the ultimate fate of Phobos and Deimos. The moons still converge towards collision within comparable timescales, supporting Hyodo et al. (2022) conclusions that the dislocation hypothesis under the dynamical scenario developed by Bagheri et al. (2021) has, in the best conditions, about 10\% chance of surviving after the first 100,000 years following their formation.

Quasi-nonsingular relative orbital elements (qnsROE) are among the most widely used state representations for formation flying and rendezvous in near-circular inclined orbits. They admit closed-form perturbed state transition matrices (STMs) and a direct geometric mapping, which underpins eccentricity/inclination (E/I)-vector separation for passive safety. Existing eccentric extensions of the qnsROE resolve this geometry in the radial--tangential--normal frame, where a residual semimajor-axis difference makes the E/I separation margin phase dependent. This paper introduces eccentric ROE that reduce to the qnsROE as \(e\to0\) and whose first-order geometry is resolved in the velocity--normal--binormal (VNB) frame, where the secular drift is confined to the velocity direction. Their first-order position and velocity maps yield a closed-form, phase-independent binormal--normal separation bound with an explicit margin for semimajor-axis residuals. Closed-form Keplerian and secular-\(J_2\) STMs and a decoupled impulsive control input matrix are derived for the same elements, and the elements are recovered as the physically normalized integration constants of the Cartesian equations of relative motion in the VNB frame. Together, these results provide a unified ROE framework for formation flying in general elliptic orbits.

It is well-known that inverse dynamics models can improve tracking performance in robot control. These models need to precisely capture the robot dynamics, which consist of well-understood components, e.g., rigid body dynamics, and effects that remain challenging to capture, e.g., stick-slip friction and mechanical flexibilities. Such effects exhibit hysteresis and partial observability, rendering them, particularly challenging to model. Hence, hybrid models, which combine a physical prior with data-driven approaches are especially well-suited in this setting. We present a novel hybrid model formulation that enables us to identify fully physically consistent inertial parameters of a rigid body dynamics model which is paired with a recurrent neural network architecture, allowing us to capture unmodeled partially observable effects using the network memory. We compare our approach against state-of-the-art inverse dynamics models on a 7 degree of freedom manipulator. Using data sets obtained through an optimal experiment design approach, we study the accuracy of offline torque prediction and generalization capabilities of joint learning methods. In control experiments on the real system, we evaluate the model as a feed-forward term for impedance control and show the feedback gains can be drastically reduced to achieve a given tracking accuracy.

We formulate gene regulatory network reconstruction from RNA velocity as a sparse dynamical inverse problem. We show that control-only data can be structurally nonidentifying and characterize excitation conditions under which controlled perturbations restore identifiability by generating complementary regulator trajectories. To enable stable reconstruction from noisy data, we develop an integral sparse estimator that avoids numerical differentiation and derive recovery bounds separating stochastic error from systematic contributions due to latent-time uncertainty, kinetic-parameter error, numerical quadrature, and model misspecification. Synthetic experiments illustrate perturbation-assisted identifiability, improved conditioning, and the robustness of integral reconstruction. Applied to perturbation-resolved RPE1 RNA-velocity data, the framework yields an empirically full-rank design whose conditioning improves with perturbational diversity and a reconstructed network core stable under perturbation subsampling. Held-out evaluation further shows that identifiability and reconstruction stability do not imply uniform predictive improvement. These results connect perturbational excitation, identifiability, and stable sparse recovery in regulatory dynamical systems.

We present a state-specific second-order perturbation theory based on a configuration interaction singles (CIS) reference and its generalized Fock operator. Starting from a fully internally contracted construction, we retain the complete doubles space and internally contracted triples in the first-order wave function. We consider two partitions, Canonical and Block-diagonal, with reference excitation energies given by the Fock excitation gap ω^{(0)} and the CIS excitation energy ω_{rm CIS}, respectively. Our analysis establishes that strict size-intensivity is preserved when the contracted-triples denominators use bare Fock gaps and the occupied--virtual Fock block is projected to remove residual spectator coupling. Based on this observation, combining Canonical triples with Block-diagonal doubles yields a size-intensive Hybrid partition. These properties are verified for water with non-interacting helium atoms. Our formulation enables O(o^3v^2) cost per matrix--vector product in a semicanonical basis. On the QUEST\#1 benchmark, Canonical and Block-diagonal show opposite systematic biases, whereas Hybrid gives the best overall accuracy among the three partitions. Its mean absolute errors for singlets and triplets are 0.24 and 0.15~eV, compared with 0.28 and 0.22~eV for CIS(D). The improvement is largest for Rydberg excitations, although CIS(D) remains more accurate for valence singlets.

Motivated by topologically protected states in wave physics, we study localised eigenmodes in one-dimensional periodic media with defects. The Su-Schrieffer-Heeger model (the canonical example of a one-dimensional system with topologically protected localised defect states) is used to demonstrate the method. Our approach can be used to describe two broad classes of perturbations to periodic differential problems: those caused by inserting a finite-sized piece of arbitrary material and those caused by creating an interface between two different periodic media. The results presented here characterise the existence of localised eigenmodes in each case and, when they exist, determine their eigenfrequencies and provide concise analytic results that quantify the decay rate of these modes. These results are obtained using both high-frequency homogenisation and transfer matrix analysis, with good agreement between the two methods.

One-step generative models construct a static generator through iterative training-time transport. Existing transport objectives primarily assess distributional motion, although a neural generator needs to realize the requested sample displacements jointly through shared parameter updates. The training-time construction raises the question: once training becomes the iterative process that constructs the final one-step map, what to optimize: the next distributional move, or the route by which the finite generator learns the final map? To address the question, we introduce Training Dynamics Action (TDAction), which selects transport targets according to local shared-parameter realization cost while retaining a prescribed level of distributional progress. We formulate the cost as a soft-terminal control problem and derive a closed-form Batch Tangent Action-to-Go value that accounts for parameter effort and terminal mismatch. The criterion captures cross-sample interactions omitted by independent pairwise costs; under isotropic mobility, the criterion agrees with quadratic Euclidean assignment for deterministic balanced couplings. Randomized tangent probes provide a low-rank implementation that constructs shared detached targets without adding an inference-time trajectory. Controlled studies examine the relationship between generator geometry, transport selection, and realized local action. On ImageNet 256times256, TDAction attains an FID below 1.1 without distillation.

We study finite-alphabet spin models on trees evolving under independent symmetric spin-flip dynamics. On the lattice the time-evolved plus measure of the low temperature Ising model in zero external field was shown to be non-quasilocal for all sufficiently large times in EnFeHoRe02. On the tree however the time-evolved plus phase of the Ising model behaves differently, as the quasilocal Gibbs property is first lost, but then recovered at a later time EnErIaKu12. We first extend this result by showing that large-time reentry into the quasilocal Gibbs regime on the tree happens more generally for all finite alphabet models, when the dynamics is started in f-stable Gibbs states. These are defined in terms of a time-independent sharp condition on the homogeneous recursion f describing the model, which can be checked explicitly. As our second and opposite result, we develop a method for proving large-time persistence of non-quasilocality of time-evolved measures. We show that even all configurations can become bad at large times, when the initial Gibbs measure corresponds to an f-saddle and give an explicit illustration for the Potts model. In our proofs we study the influence of spatially inhomogeneous perturbations to the solutions of a time-dependent fixed point problem.

Motivated by applications in Diophantine approximation, we develop a new fibering mechanism for non-degenerate manifolds in R^n, showing that they admit local decompositions into families of non-degenerate curves with uniform quantitative non-degeneracy properties. The manifolds are required to be C^N with the essentially optimal bound Ngeq maxlbrace n,l+1rbrace, where the manifold is l non-degenerate. Furthermore, we show that this uniform quantitative local control can be globalised into a qualitative statement, so that almost every point of a non-degenerate manifold lies on a non-degenerate curve contained in the manifold. Our approach is perturbative and shows that the fibering structure arising in the analytic setting is stable under sufficiently small C^N perturbations. The method provides a framework for extending fibering based results in Diophantine approximation from curves to manifolds. Such applications are considered in the paper.

We study a one dimensional nonlinear Klein-Gordon equation with a potential, a localized quadratic nonlinearity, and a non-localized quartic nonlinearity. We assume that the linearized operator has a single discrete eigenvalue below the continuous spectrum, corresponding to an ''internal mode''. This eigenvalue generates localized, time-periodic solutions for the linear equation. Assuming the natural Fermi Golden Rule, we give a global description of the dynamics of the amplitude of the internal mode through the radiation damping mechanism, and prove scattering for the radiation. Our approach is based on the distorted Fourier transform and a collection of refined dispersive decay and smoothing estimates. The corresponding cubic problem is closely related to the question of global-in-space dispersive asymptotics for perturbations of kink solutions in the classical ϕ^4 model, which remains a challenging open question. From the perspective of nonlinear estimates, a quartic (non-localized) interaction is essentially sharp for our analysis, and closing the estimates with such a low degree nonlinear term requires a careful and delicate treatment. As a direct application of our analysis, we prove a result on the asymptotic stability of kinks for classes of scalar field models that can be seen as perturbations of the ϕ^4 model.

Generative modeling has shown increasing promise for predicting cellular perturbation effects under chemical compound treatments. Existing approaches either model perturbation as a distribution-to-distribution mapping without explicit concentration handling, or treat concentration as a discrete class label, precluding continuous dose control. We introduce a joint flow matching approach that simultaneously models cell latents and drug concentration via a dual-timestep formulation, enabling dose-conditioned single-cell morphing through the invertibility of flow matching. The joint formulation induces a monotonic dose-response geometry in latent space and additionally supports concentration estimation from cell morphology. As proof of concept, we further demonstrate generalization to an unseen dose held out during training. Empirically, our method achieves competitive or improved per-concentration metrics on two compounds compared with representative baselines, while enabling capabilities structurally unavailable to discrete-class methods.

Recent benchmarks reveal that models for single-cell perturbation response are often outperformed by simply predicting the dataset mean. We trace this anomaly to a metric artifact: control-referenced deltas and unweighted error metrics reward mode collapse whenever the control is biased or the biological signal is sparse. Large-scale in silico simulations and analysis of two real-world perturbation datasets confirm that shared reference shifts, not genuine biological change, drives high performance in these evaluations. We introduce differentially expressed gene (DEG)-aware metrics, weighted mean-squared error (WMSE) and weighted delta R^{2} (R^{2}_{w}(Δ)) with respect to all perturbations, that measure error in niche signals with high sensitivity. We further introduce negative and positive performance baselines to calibrate these metrics. With these improvements, the mean baseline sinks to null performance while genuine predictors are correctly rewarded. Finally, we show that using WMSE as a loss function reduces mode collapse and improves model performance.

Disordered stealthy hyperuniform (SHU) systems are emerging as platforms for controlling classical and quantum transport due to vanishing single-scattering contributions in the stealthy regime. Here, to our knowledge, we present the first perturbation theory of one-dimensional quantum transport through a continuum of identical point scatterers with SHU positional disorder. Our perturbation theory indicates the exact cancellation of all the lower-order terms due to the Fourier-space stealthy condition S(q)=0, and the further suppression of the lowest non-vanishing fourth order in the Lyapunov exponent λ(k) due to the real-space hyperuniform constraint limlimits_{Dtoinfty}σ_D^2=c<infty. Our findings presents universal implications of the general wave-propagation phenomena in disordered SHU systems.

We present a continuous geometric framework that models the discrete algebraic operations of the Transformer architecture as an integro-differential equation (IDE) on a semantic fiber bundle calE = calM times R^d. Beginning from a single geometric axiom -- that the token sequence forms a discrete 1-manifold equipped with a canonical measure lattice -- we translate every core component of the modern Transformer (RMSNorm, RoPE, Softmax Attention, FFN, Residual Stream, SGD, Weight Decay) into a cohesive vocabulary of differential geometry, measure theory, and stochastic calculus. The resulting framework yields quantitative predictions spanning entropic optimal transport (Attention as a Schrödinger bridge) and non-equilibrium thermodynamics (SGD as Itô diffusion violating detailed balance). We conduct a six-part experimental campaign across five architectures (Qwen3, LLaMA\nobreakdash-3.1, Gemma\nobreakdash-3, GPT-2, Mistral) spanning 124M to 8B parameters. The empirical observables are quantitatively consistent with the geometric predictions: the ε^{-1/2} Lipschitz scaling calibration at machine precision (R^2 = 1.000), the Lie--Trotter operator-splitting torsion, the symmetric ablation instability confirming the Dual-Law of Topological Stability, the calO(1/k) thermodynamic suppression of Poincaré recurrence on the RoPE torus, the thermodynamic context-limit phase transition, and the Non-Equilibrium Steady State parameter vortex -- verified across two optimizers (AdamW and Pure SGD) to exclude momentum artifacts. The results demonstrate that analyzing Transformers through the lens of continuous stochastic differential geometry provides a predictive descriptive vocabulary for the stability limits, context bounds, and optimization dynamics of Large Language Models.

Excited electronic states are difficult to accurately and tractably model, particularly those exhibiting multiexcitonic character. Scalable single-reference excited state methods typically fail to describe such states as they suffer from the defects of the mean-field approximation and/or neglect higher-rank excitation operators. To address this, we derive the [T] perturbative correction to the quantum self-consistent equation-of-motion unitary coupled cluster singles and doubles (q-sc-EOM-UCCSD) method. The method captures triple excitation effects through a classical step of second-order in many-body perturbation theory following a q-sc-EOM-UCCSD calculation on a quantum computer. The perturbative correction developed has a O(N^7) classical computational time scaling. We incorporate [T] into a hybrid compute strategy wherein eigenvectors of the effective Hamiltonian from the hybrid quantum-classical q-sc-EOM-UCCSD algorithm are relayed to a classical computer which performs the postprocessing required for the [T] correction. The benefits of [T] are quantified in a benchmark covering a variety of electronically excited states of the isoelectronic CH^+ and BH molecules. We find that the addition of the [T] correction to both trotterized and full operator variants of q-sc-EOM-CCSD can offer dramatic improvements over baseline q-sc-EOM-UCCSD. Our assessment clearly demonstrates the importance of considering higher-rank excitation operators in q-sc-EOM-UCCSD, quantifies the overall success of the [T] correction, and discusses some of its limitations.

Ever since the original algorithm by Nesterov (1983), the true nature of the acceleration phenomenon has remained elusive, with various interpretations of why the method is actually faster. The diagnosis of the algorithm through the lens of Ordinary Differential Equations (ODEs) and the corresponding dynamical system formulation to explain the underlying dynamics has a rich history. In the literature, the ODEs that explain algorithms are typically derived by considering the limiting case of the algorithm maps themselves, that is, an ODE formulation follows the development of an algorithm. This obfuscates the underlying higher order principles and thus provides little evidence of the working of the algorithm. Such has been the case with Nesterov algorithm and the various analogies used to describe the acceleration phenomena, viz, momentum associated with the rolling of a Heavy-Ball down a slope, Hessian damping etc. The main focus of our work is to ideate the genesis of the Nesterov algorithm from the viewpoint of dynamical systems leading to demystifying the mathematical rigour behind the algorithm. Instead of reverse engineering ODEs from discrete algorithms, this work explores tools from the recently developed control paradigm titled Passivity and Immersion approach and the Geometric Singular Perturbation theory which are applied to arrive at the formulation of a dynamical system that explains and models the acceleration phenomena. This perspective helps to gain insights into the various terms present and the sequence of steps used in Nesterovs accelerated algorithm for the smooth strongly convex and the convex case. The framework can also be extended to derive the acceleration achieved using the triple momentum method and provides justifications for the non-convergence to the optimal solution in the Heavy-Ball method.

We present the results of simulated injections testing the first Bayesian search-pipeline capable of investigating the angular-structure of a gravitational-wave (GW) background influencing pulsar signals. A stochastic background of GWs from the incoherent superposition of many inspiraling supermassive black hole binaries at nHz frequencies is likely to be the dominant GW signal detectable by pulsar timing arrays (PTAs). Even though one might expect a background composed of a high-redshift cosmological population of sources to be fairly isotropic, deviations from isotropy may be indicative of local GW hotspots or some form of continuous anisotropy in the angular-distribution of GW-power. A GWB induces time-of-arrival deviations in pulsar signals which are correlated between separated pulsars. In an isotropic background this cross-correlation follows a distinctive relationship, known as the Hellings and Downs curve, that depends only on the angular separation of the pulsars. If the background is anisotropic, the cross-correlation is different, but predictable, and also depends on the absolute position of the pulsars. By simulating datasets containing GWBs with various anisotropic configurations, we have explored the prospects for constraining anisotropy using near future data. We find that at moderate to high signal to noise ratio the assumption of isotropy is no longer an appropriate description of the simulated background. Furthermore, we can recover the nature of the injected anisotropy in a Bayesian parameter-estimation search, and propose a prior on the anisotropy search-space motivated by the physicality of the implied distribution of sources.

Topical observations of the thermosphere at altitudes below 200 , km are of great benefit in advancing the understanding of the global distribution of mass, composition, and dynamical responses to geomagnetic forcing, and momentum transfer via waves. The perceived risks associated with such low altitude and short duration orbits has prohibited the launch of Discovery-class missions. Miniaturization of instruments such as mass spectrometers and advances in the nano-satellite technology, associated with relatively low cost of nano-satellite manufacturing and operation, open an avenue for performing low altitude missions. The time dependent coefficients of a second order non-homogeneous ODE which describes the motion have a double periodic shape. Hence, they will be approximated using Jacobi elliptic functions. Through a change of variables the original ODE will be converted into Hill's ODE for stability analysis using Floquet theory. We are interested in how changes in the coefficients of the ODE affect the stability of the solution. The expected result will be an allowable range of parameters for which the motion is dynamically stable. A possible extension of the application is a computational tool for the rapid evaluation of the stability of entry or re-entry vehicles in rarefied flow regimes and of satellites flying in relatively low orbits.

We develop a Gaussian comparison theory for posterior inference in non-Gaussian high-dimensional models. The framework allows for model misspecification and does not require the posterior distribution itself to be approximately Gaussian. Working directly with likelihood processes on separable function spaces, we establish explicit nonasymptotic free energy bounds controlled by first two moment discrepancies and local third moments. A perturbation-and-convexity argument transfers these comparisons to sandwich bounds for posterior mean squared error and posterior variance, including one-sided conclusions at nondifferentiable phase transitions. In high-dimensional product models, these conditions reduce to local moment controls and a canonical feature-radius scaling. Under weak regularity requirements, the resulting universality theory applies to a broad class of likelihood models, ranging from exponential families to more general regular local log-likelihoods. The framework is illustrated on sparse Bernoulli hypergraph inference.

Many biological processes involve numerous coupled degrees of freedom, yet free-energy estimation is often restricted to one-dimensional profiles to mitigate the high computational cost of multidimensional sampling. In this work, we extend Fokker--Planck Score Learning (FPSL) to efficiently reconstruct two-dimensional free-energy landscapes from non-equilibrium molecular dynamics simulations using different types of collective variables. We show that explicitly modeling orthogonal degrees of freedom reveals insights hidden in one-dimensional projections at negligible computational overhead. Additionally, exploiting symmetries in the underlying landscape enhances reconstruction accuracy, while regularization techniques ensure numerical robustness in sparsely sampled regions. We validate our approach on three distinct systems: the conformational dynamics of alanine dipeptide, as well as coarse-grained and all-atom models of solute permeation through lipid bilayers. We demonstrate that, because FPSL learns a smooth score function rather than histogram-based densities, it overcomes the exponential scaling of grid-based methods, establishing it as a data-efficient and scalable tool for multidimensional free-energy estimation.

Virtual cell models should capture phenotypes induced by specific perturbations. However, image-based models are typically trained and evaluated to match real-image distributions, which alone does not explicitly prioritize perturbation-specific biological responses. Recent approaches add biological signals through reinforcement-learning post-training or inference-time steering, raising a central question: where should biological response information enter the generative pipeline? We introduce PerturbBridge, a stochastic data-to-data bridge model that directly supervises perturbation-specific phenotypes in predicted perturbed images during training. PerturbBridge jointly optimizes bridge regression and differentiable biological response losses, with biological gradients passing through a frozen image encoder. We further introduce perturbation-response evaluations based on downstream classification and retrieval. Across three microscopy benchmarks for perturbation profiling and subcellular imaging, PerturbBridge surpasses CellFlux in biological fidelity, image quality, and sampling efficiency. On BBBC021, mechanism-of-action classification improves by 5.66 and 7.5 percentage points with morphological and learned visual features, respectively. On JUMP and AllenCell, retrieval Hit@10 and Hit@1 improve by 1.77 and 7.15 percentage points, respectively. On BBBC021 and JUMP, PerturbBridge achieves lower FID with 80% fewer model evaluations than CellFlux. Overall, these results show that directly supervising perturbation responses during training improves phenotypic fidelity while enabling efficient cellular image generation. Code is available at https://github.com/yyc1215lll-creator/PerturbBridge.

The Multilevel Markov chain Monte Carlo algorithm accelerates Bayesian inversion by exploiting correlations between discretized quantities of interest across a hierarchy of model resolutions. A key practical parameter is the subsampling rate used to generate coarse-level proposals for the finer-level chains. Existing practice sets this rate equal to an integrated autocorrelation time as a proxy for proposal decorrelation, but this choice can be overly conservative and lead to substantial computational overhead. In this work we treat finite subsampling as an error-budget question. We derive a cost-error criterion for selecting a computationally efficient subsampling rate using estimates of sample variances, integrated autocorrelation times, and per-level costs. The criterion balances multilevel sampling errors across levels rather than enforcing approximate independence of the coarse proposals. We clarify the theoretical role of independence through an ideal reset-reference kernel, for which independent coarse proposals may be replaced by proposals generated from a reversible coarse-level kernel. We derive a Poisson-equation representation of the perturbation bias resulting from finite subsampling. Under a state-averaged lower-level forgetting assumption, this yields a conditional geometric perturbation-bias bound; in computation, the corresponding projected diagnostic is used as an empirical error-budget check. Numerical experiments on a highly autocorrelated elasticity beam benchmark show substantial reductions in computational cost compared with IAT-based subsampling. A second Darcy-flow inverse problem gives supporting evidence of qualitatively similar finite-subsampling behaviour in another elliptic benchmark.

Classical Dobrushin--Shlosman theory uses heat-bath block updates to identify sharp temperature thresholds for establishing the rapid mixing of Gibbs samplers. In particular, these mixing guarantees often hold even when stricter single-site conditions fail. We extend this approach to noncommuting quantum lattice systems through a quantum Dobrushin--Shlosman condition for finite-block dynamics, which we call smoothed heat-bath dynamics. We establish this condition in two regimes. For finite-range quantum spin chains at every fixed finite temperature, we prove logarithmic trace-norm mixing in system size, with normalized bounds uniform in on-site fields and single exponential in inverse temperature. We also prove stability under small local perturbations of interacting, possibly noncommuting reference Hamiltonians on graphs of polynomial volume growth. For classical references with bounded local interactions, uniform strong spatial mixing implies our quantum condition. With bounded local terms and fixed physical, geometric and block parameters, the resulting samplers prepare Gibbs states to trace-norm error varepsilon using Npolylog(N/varepsilon) gates and classical operations. Our block updates combine a local Gibbs reset with quantum belief propagation to incorporate interactions across the block boundary, yielding exactly Gibbs-preserving, KMS-reversible channels. Two independently tunable parameters control contraction: an internal evolution time suppresses the influence of sites inside a block, while the block size allows interior contraction to dominate boundary influence. This finite-time relaxation has no counterpart in a classical heat-bath block update.

The statistical mechanics of Gibbs is a juxtaposition of subjective, probabilistic ideas on the one hand and objective, mechanical ideas on the other. In this paper, we follow the path set out by Jaynes, including elements added subsequently to that original work, to explore the consequences of the purely statistical point of view. We show how standard methods in the equilibrium theory could have been derived simply from a description of the available problem information. In addition, our presentation leads to novel insights into questions associated with symmetry and non-equilibrium statistical mechanics. Two surprising consequences to be explored in further work are that (in)distinguishability factors are automatically predicted from the problem formulation and that a quantity related to the thermodynamic entropy production is found by considering information loss in non-equilibrium processes. Using the problem of ion channel thermodynamics as an example, we illustrate the idea of building up complexity by successively adding information to create progressively more complex descriptions of a physical system. Our result is that such statistical mechanical descriptions can be used to create transparent, computable, experimentally-relevant models that may be informed by more detailed atomistic simulations. We also derive a theory for the kinetic behavior of this system, identifying the nonequilibrium `process' free energy functional. The Gibbs relation for this functional is a fluctuation-dissipation theorem applicable arbitrarily far from equilibrium, that captures the effect of non-local and time-dependent behavior from transient driving forces. Based on this work, it is clear that statistical mechanics is a general tool for constructing the relationships between constraints on system information.

Spacecraft rendezvous on elliptical orbits must hold a safety corridor under navigation noise, unmodelled perturbations, and thrust errors driven by propellant mass uncertainty. This paper develops a tube-based model predictive controller for the Yamanaka-Ankersen linear time-varying dynamics, carrying constraint-tightening tube methods from circular to elliptical orbits. A horizon-dependent, element-wise error bound propagates the actual closed-loop matrices along the prediction window, so early prediction steps keep nearly the full corridor that a constant-width tube would surrender. A multiplicative-to-additive conversion folds mass and thrust uncertainty into the same tightening recursion, and a Perron-Frobenius spectral-radius condition supplies a computable certificate that the tightening converges, with an explicit input-to-state stability gain. In a paired Monte Carlo campaign on a Mars sample-return orbit, the tube controller cuts mean corridor violations by more than an order of magnitude against a nominal predictive baseline at comparable fuel cost. A nonlinear truth-model test with oblateness perturbations well beyond the assumed disturbance budget leaves the corridor unviolated, and when the design envelope is exceeded the tightened problem becomes infeasible and the controller reverts to a saturated linear fallback, making the loss of guarantee explicit rather than silent. The construction requires only element-wise arithmetic and an open-source quadratic-programming solver.

Predicting phenotypic and transcriptional responses to perturbations at single-cell resolution provides a powerful tool for probing biological systems. However, existing methods typically rely on fixed mappings learned during training, making it challenging to calibrate distribution shifts or adapt to novel perturbation conditions during inference. Here, we present scEGFlow, an energy-guided flow matching framework that dynamically bridges control and perturbed cellular states. scEGFlow models continuous transitions from control cell populations to perturbed states using conditional flow matching. It then applies condition-specific energy gradients to correct and steer these predictions, enabling flexible adjustments without retraining the flow model. Evaluations across benchmarks spanning imaging phenotypes and transcriptomic profiles show that scEGFlow outperforms existing methods in reconstructing response distributions under both seen and unseen perturbation conditions, faithfully preserving cellular manifold geometry and population heterogeneity. This advantage is notable when adapting to new conditions with only a few measured cells, consistently improving prediction accuracy. Furthermore, scEGFlow accurately recapitulates perturbation-induced up- and down-regulation patterns across consensus gene expression signatures, where energy guidance improves the agreement between predicted and observed regulatory directions. Ultimately, these findings demonstrate that scEGFlow provides a modular, generalizable, and steerable solution for single-cell perturbation modeling. By grounding generative flows in learned biological landscapes, this architecture establishes a new computational paradigm for navigating and manipulating cellular behavior in silico.

Among a huge variety of known two-dimensional materials, some of them have anisotropic crystal structures; examples include so different systems as a few-layer black phoshphorus (phosphorene), beryllium nitride BeN_4, van der Waals magnet CrSBr, rhenium dichalgogenides ReX_2. As a consequence, their optical and electronic properties turn out to be highly anisotropic as well. In some cases, the anisotropy results not just in a smooth renormalization of observable properties in comparison with the isotropic case but in the appearance of dramatically new physics. The examples are hyperbolic plasmons and excitons, strongly anisotropic ordering of adatoms at the surface of two-dimensional or van der Waals materials, essential change of transport and superconducting properties. Here, we present a systematic review of electronic structure, transport and optical properties of several representative groups of anisotropic two-dimensional materials including semiconductors, anisotropic Dirac and semi-Dirac materials, as well as superconductors.

Vacuum Kerr perturbations in general relativity have identical even- and odd-parity quasinormal frequencies. We establish this parity isospectrality for linear gravitoelectromagnetic perturbations of subextremal Kerr--Newman--de Sitter black holes, without a slow-rotation or small-charge expansion. We reconstruct the radiative metric and gauge-potential perturbations directly from gauge-invariant master variables in radiation gauge, without an intermediate complex potential.

Dislocation model of the supersolid state of ^4He was proposed in 1987 by one of the authors of the review. The model obtained strong support by numerous experimental and theoretical investigations from 2007 to date. In these investigations the validity of the idea put forward in 1987 was confirmed, and new conceptions of superclimb of dislocations and of the giant isochoric compressibility or the syringe effect were proposed. In this paper we review main achievements of theoretical and experimental studies of dislocation-induced supersolid and present current understanding of this phenomenon.

Phenotypic plasticity, the ability of cells to switch between states, is central to development, differentiation, and therapy resistance. Although it is modeled at several scales, from compartmental ODEs to phenotype-structured PDEs and single-cell stochastic equations, a framework connecting these descriptions is missing. We present such a framework. Starting from a general n-compartment ODE model encompassing nonlinear growth and linear transitions between phenotypes, we show, with a new, elementary and generalizable proof of a recent theorem, that under uniform competition, the long-term population distribution is solely governed by transition rates. All phenotypes become selectively neutral at saturation, and the imprint of fitness differences during growth fades at an explicit rate. Restricting transitions to neighboring states transforms the model into a discretization of a phenotype-structured reaction-diffusion-advection PDE. In this continuum model, diffusion and advection are identified from switching rates, and fitness remains asymptotically irrelevant. Interpreting the advection velocity as the negative gradient of an effective epigenetic potential transforms the PDE into a Fokker--Planck equation and converts single-cell trajectories into stochastic gradient descent (SGD) in the Langevin sense on the phenotypic landscape. Non-local transitions, such as mutations, are incorporated via an integro-differential term, yielding a unified model with reaction, gradient flow, diffusion, and jumps. State-dependent noise reshapes the effective landscape without altering the underlying potential. This gives cancer a route to elevated plasticity that static, single-cell snapshots cannot distinguish from a changed landscape. This framework provides a physical interpretation of Waddington's landscape, where cells perform SGD, and cancer corresponds to a corrupted landscape.